| Sequence ID | dm3.chr2L |
|---|---|
| Location | 800,291 – 800,464 |
| Length | 173 |
| Max. P | 0.872952 |
| Location | 800,291 – 800,464 |
|---|---|
| Length | 173 |
| Sequences | 4 |
| Columns | 176 |
| Reading direction | forward |
| Mean pairwise identity | 75.14 |
| Shannon entropy | 0.40468 |
| G+C content | 0.36147 |
| Mean single sequence MFE | -36.40 |
| Consensus MFE | -14.09 |
| Energy contribution | -17.78 |
| Covariance contribution | 3.69 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.75 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.01 |
| SVM RNA-class probability | 0.872952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 800291 173 + 23011544 GCAAAUCUGAGAGCAUACUAAAGUUCGAUAAUAAAAAUGCGAGUUUGA--UGAUAAAACCAAAGUUGGUAUUAUUUUUUAAAACUCUACU-AAAAAUUGGAAAUCCCGUACUAAAAUGAUCCAAGUAUUCUGAUUCAUGGCCCCAAAGUCACGAUUCCAUCUCGCAUUUCCCUGCG (((.......((((........))))........((((((((((((((--.(((((.((((....)))).)))))..)))))........-......((((((((..(((((...........)))))...)))((.((((......)))).))))))).)))))))))...))). ( -34.30, z-score = -2.01, R) >droSim1.chr2L 802307 174 + 22036055 GCAAAUUUGAGAGCAUACUAAAGUUCGAUAAUAAAAAUGCGAGUUUGG--UGAUAAAACCAAAGUCGGUAUUAUUUUAUAAAACUCUACUAAAAAAUUGGAAAUCCUGCACUAAAAUGAUGCGAGUAUUCUGAUUCAUGGCCCCAAAGUCACGAUUCCAUCUCGCAUCUCCCUGCG (((.((((.((.(((......((((..((((....(((((((.(((((--(......)))))).)).)))))...))))..)))).............((....))))).)).))))((((((((......((.((.((((......)))).)).))...))))))))....))). ( -42.60, z-score = -3.38, R) >droSec1.super_14 770569 174 + 2068291 GCAAAUUUGAGUGCAUACUAAAGUUCGAUAAUAAAAAUGCGAGUUUGG--UGAUAAAACCAAAGUCGGUAUUAAUUUAUAAAACUCUACUGAAAAAUUGGAAAUCCUGUACUAAAAUGAUGCGAUUAUUCUGAUUCAUGGCCCCAAAGUCACGAUUCCCUCUCGCAUCUCCCUGCG (((.((((.((((((......((((..((((....(((((((.(((((--(......)))))).)).)))))...))))..)))).............((....)))))))).))))(((((((.......((.((.((((......)))).)).))....)))))))....))). ( -41.60, z-score = -3.52, R) >droYak2.chr2L 783380 137 + 22324452 --------------------------------------GCAAGUUUGAGAUAACGGAACAAAAAUUGGUAUUA-UUAAUAUUAGUGUAUCAGAAGUAUCAAAUUUCUGUACUAAAAUGAUUCGAAUAUUCCGAUUCUUGGCCCCAAAAUCACGUUUCCAUCUCCCCCUUCUCUGCG --------------------------------------(((((...(((((...(((((.......((...((-((...((((..(((.(((((((.....)))))))))).....))))...))))..))((((.(((....)))))))..))))).)))))......)).))). ( -27.10, z-score = -2.07, R) >consensus GCAAAUUUGAGAGCAUACUAAAGUUCGAUAAUAAAAAUGCGAGUUUGA__UGAUAAAACCAAAGUCGGUAUUAUUUUAUAAAACUCUACUAAAAAAUUGGAAAUCCUGUACUAAAAUGAUGCGAGUAUUCUGAUUCAUGGCCCCAAAGUCACGAUUCCAUCUCGCAUCUCCCUGCG ......................................((((((((.....(((((.(((......))).))))).....))))))...............................((((((((......((.((.((((......)))).)).))...)))))))).....)). (-14.09 = -17.78 + 3.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:06:59 2011