| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,192,535 – 23,192,634 |
| Length | 99 |
| Max. P | 0.725952 |
| Location | 23,192,535 – 23,192,634 |
|---|---|
| Length | 99 |
| Sequences | 12 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 76.49 |
| Shannon entropy | 0.53402 |
| G+C content | 0.37723 |
| Mean single sequence MFE | -20.86 |
| Consensus MFE | -13.64 |
| Energy contribution | -13.32 |
| Covariance contribution | -0.31 |
| Combinations/Pair | 1.14 |
| Mean z-score | -0.78 |
| Structure conservation index | 0.65 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.725952 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23192535 99 + 27905053 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACGUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCC-GAAAUGACCUGACUCCAAGUUUAUCU----- ...(((((((((((((((((((((((....))).....)))))).))))).(((((....((.....))..))-)))..........)))))))))....----- ( -16.30, z-score = 0.91, R) >droSim1.chr3R_random 1102757 100 + 1307089 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACGUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCCCGAAAUGACCCGACUCCAAGUUUAUCU----- ...(((((((((((((((((((((((....))).....)))))).)))))..((((...(((((((........))))))).)))).)))))))))....----- ( -18.40, z-score = 0.34, R) >droSec1.super_13 1936084 100 + 2104621 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACGUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCCCGAAAUGACCCGACUCCAAGUUUAUCU----- ...(((((((((((((((((((((((....))).....)))))).)))))..((((...(((((((........))))))).)))).)))))))))....----- ( -18.40, z-score = 0.34, R) >droYak2.chr3R 5525187 99 - 28832112 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACGUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCC-GAAAUGACCCGACUCCAAGUUUAUCU----- ...(((((((((((((((((((((((....))).....)))))).)))))..((((...(((((((.......-))))))).)))).)))))))))....----- ( -18.10, z-score = 0.47, R) >droEre2.scaffold_4820 5625676 99 - 10470090 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACGUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCU-CAAAUGACCCGACUCUCAGUUUAUCU----- .(((((.(((((....((((((((((....))).....)))))))....(((((((....((.....))...)-)))))).))))).)))))........----- ( -21.30, z-score = -0.91, R) >droAna3.scaffold_13340 4191813 94 - 23697760 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUU--CGUUCUCG----GCCCCCAAACGGAGUUUAUCU----- ..((((((..((((((((((((((((....))).....)))))).))))).))..)))))).(((--((((...(----....)..))))))).......----- ( -17.30, z-score = 0.77, R) >dp4.chr2 8849979 91 + 30794189 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUUCGGGGCUUCG---------GCCCCGAGUUUUAUCG----- ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))..((((((((....---------))))))))........----- ( -32.00, z-score = -3.99, R) >droPer1.super_0 2662752 91 + 11822988 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUUCGGGGCUUCG---------GCCCCGAGUUUUAUCG----- ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))..((((((((....---------))))))))........----- ( -32.00, z-score = -3.99, R) >droWil1.scaffold_181089 3426301 85 + 12369635 GUGAGAUUUGGGAUUUAUAAUGUACGCUCACGUAAUUGACAUUGUUAAAUAUUUGAAUUUCGUUCACUUUUUUCUUUUUUUUGUU-------------------- ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))........................-------------------- ( -13.10, z-score = -0.86, R) >droVir3.scaffold_13047 17696392 105 + 19223366 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUUUGCCAAGGCUCAGCCGAUCUCAGCAAGGCUCAAUUUUCCU ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))(((((((..(((.((....)))))..)))))))........... ( -23.30, z-score = -0.04, R) >droMoj3.scaffold_6540 20173688 97 - 34148556 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUACGUUUUACCUACACUUGGUCGAACUU--------UCACUUUCACU ((((((((..((((((((((((((((....))).....)))))).))))).))..))))..((((.(((.......))).))))..--------))))....... ( -19.20, z-score = -1.34, R) >droGri2.scaffold_15074 839893 93 - 7742996 GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUUUGCCAACGUUCGGCCGAACUU--------UCAUUUU---- ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))((((.(((.......))).))))..--------.......---- ( -20.90, z-score = -1.02, R) >consensus GUGAGAUUUGGGAUUUAUAAUGUGCGCUCACGUAAUUGACAUUGUUAAAUAUUUGGAUUUCGUUUUUCGUCCUCGAAAUGACCCGACUCCAAGUUUAUCU_____ ..((((((..((((((((((((((((....))).....)))))).))))).))..))))))............................................ (-13.64 = -13.32 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:51 2011