| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,189,014 – 23,189,106 |
| Length | 92 |
| Max. P | 0.763967 |
| Location | 23,189,014 – 23,189,106 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 75.67 |
| Shannon entropy | 0.44751 |
| G+C content | 0.52958 |
| Mean single sequence MFE | -28.43 |
| Consensus MFE | -17.36 |
| Energy contribution | -16.23 |
| Covariance contribution | -1.13 |
| Combinations/Pair | 1.60 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.62 |
| SVM RNA-class probability | 0.763967 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23189014 92 + 27905053 ---AUGGAAUCUGCGGCGGCAGAGCCAGCGUCUGUUGGCAAAAAAACAGAACAGAUG---GAGCUGGCUGAAGCCAAGCCGAAACCAAAUACCAAUCC ---.(((......(((((((..(((((((.((((((........)))))).......---..)))))))...)))..))))...)))........... ( -31.10, z-score = -2.33, R) >droSim1.chr3R_random 1099266 92 + 1307089 ---AUGGAAUCUGCGGCUGCAGAGCCAGCGUCUGUUGGCAAAAAAACCGAACAGAUG---GAGCAGGCUGAAGCCAAGCCGAAACCAAAUACCAAUCC ---.(((..(((((((((....))))..((((((((((........)).))))))))---..)))((((.......))))))..)))........... ( -29.60, z-score = -2.14, R) >droSec1.super_13 1932555 92 + 2104621 ---AUGGAAUCUGCGGCUGCAGAGCCAGCGUCUGUUGGCAAAAAAACCGAACAGAUG---GAGCAGGCUGAAGCCAAGCCUAAACCAAAUACCAAUCC ---.(((.....((((((....))))..((((((((((........)).))))))))---..))(((((.......)))))...)))........... ( -29.30, z-score = -2.09, R) >droYak2.chr3R 5521584 92 - 28832112 ---AUGGAAUCUGCGGCUGUGGAGCCAGUGUCUGUUGGCAAAAAACCCGAACAGAUG---GAGCAGGCAGCAGCCAAGCCGAAACCAAAUACCAAUCC ---.(((..((.((((((((...(((.(((((((((((........)).))))))).---..)).))).))))))..)).))..)))........... ( -29.30, z-score = -1.47, R) >droEre2.scaffold_4820 5622222 92 - 10470090 ---GCGGAAUCUGUGGCUACAGAGCCAGCUUCUGUUGGCAAAAAAACCGAGCAGAUG---GAGCAGGCUGCAGUCAUGCCGAAACCAAAUACCAGUCC ---.(((...(((..(((.....((((((....))))))...........((.....---..)).)))..))).....)))................. ( -26.60, z-score = -0.45, R) >droWil1.scaffold_181089 3422061 95 + 12369635 AGAGAAACACCAGUAGCAGUAGCAGCAGCUGAAGCUGUCAAGAAACGAGAGCAGCAGCCAGCUUCGGUUUCGACUGGGCCCAAAC--AACCGCAGCC- .........((((((((..((((....))))..))).....(((((..((((........))))..))))).)))))........--..........- ( -24.70, z-score = 0.07, R) >consensus ___AUGGAAUCUGCGGCUGCAGAGCCAGCGUCUGUUGGCAAAAAAACCGAACAGAUG___GAGCAGGCUGAAGCCAAGCCGAAACCAAAUACCAAUCC .............((((......(((..((((((((((........)).))))))))...).)).(((....)))..))))................. (-17.36 = -16.23 + -1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:50 2011