| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,181,020 – 23,181,111 |
| Length | 91 |
| Max. P | 0.978315 |
| Location | 23,181,020 – 23,181,111 |
|---|---|
| Length | 91 |
| Sequences | 11 |
| Columns | 105 |
| Reading direction | forward |
| Mean pairwise identity | 75.40 |
| Shannon entropy | 0.51762 |
| G+C content | 0.46063 |
| Mean single sequence MFE | -24.16 |
| Consensus MFE | -14.38 |
| Energy contribution | -14.74 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.81 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.99 |
| SVM RNA-class probability | 0.978315 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23181020 91 + 27905053 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGAA---GCAGCAUCAUCCUUCUUCCCCCUGAG----------- .((((((..........((((((((..(((......)))..))))))))(((....)))......---))))))....................----------- ( -24.70, z-score = -2.48, R) >droSim1.chr3R 22926020 90 + 27517382 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGA----GCAGCAUCAUCCUUCUUCCCCCUGAG----------- .((((((..........((((((((..(((......)))..))))))))(((....))).....----))))))....................----------- ( -24.70, z-score = -2.45, R) >droSec1.super_13 1924516 90 + 2104621 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGA----GCAGCAUCAUCCUUCUUCCCCCUGAG----------- .((((((..........((((((((..(((......)))..))))))))(((....))).....----))))))....................----------- ( -24.70, z-score = -2.45, R) >droYak2.chr3R 5512734 97 - 28832112 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGAGCA-GCAGCAUCAUCCUUGUUCUUCCCCCCUUAC------- .((((((.(((......((((((((..(((......)))..))))))))(((....)))...).)).-))))))........................------- ( -26.50, z-score = -2.46, R) >droEre2.scaffold_4820 5613632 90 - 10470090 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGA----GCAGCAUCAUCCUUGUUCCCCCUCAG----------- .((((((..........((((((((..(((......)))..))))))))(((....))).....----))))))....................----------- ( -24.70, z-score = -2.56, R) >droAna3.scaffold_13340 4179842 101 - 23697760 UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGA----ACAGCAUCAUCCUUCGUUCGUUCGCCCGCUUAGCCUG ..((((.(((.((.(((((((((((..(((......)))..)))))))).............((----((.............))))))).))..)))))))... ( -27.22, z-score = -1.71, R) >dp4.chr2 8838396 91 + 30794189 UUGCUGCAGCCGGCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGAACAGAGAGCAUCAUUCUCCCAUCUGCU-------------- ((((((....)))))).((((((((..(((......)))..)))))))).....(((...(((((..((.....)).)))))....)))..-------------- ( -25.40, z-score = -1.95, R) >droPer1.super_0 2651172 93 + 11822988 UUGCUGCAGCCGGCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGAACAGAGAGCAUCAUUCUCUCAUCUGCUCU------------ ((((((....)))))).((((((((..(((......)))..))))))))..........((((....(((((.......))))).....))))------------ ( -27.60, z-score = -2.23, R) >droWil1.scaffold_181089 3413005 87 + 12369635 UUGUUGCAGCUGACAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCAGUUAGA----CUGGAGAGACUGCAGCAUUGUUCUAUGCUAAGAA-------------- .(((((((((((((......(((((..(((......)))..))))).))))).----((....)).))))))))...((((......))))-------------- ( -19.70, z-score = 0.37, R) >droMoj3.scaffold_6540 20159850 81 - 34148556 UUGUUGCAGCUACCAAUGUGGCACUAAUUAGAAGUAUAAAAGGUGCUACAACAACAGUUUAAGA----GCUGUCUCUGCCAAGCA-------------------- .((((((((.......(((((((((..(((......)))..)))))))))...((((((....)----)))))..))))..))))-------------------- ( -22.30, z-score = -1.14, R) >droVir3.scaffold_13047 17684117 72 + 19223366 GUGUUGCAGCUACCAGCGUGGCACUAAUUAGAAGUAUAAAAGGUGCUACAACAACAUUUAAAGA----GCUGUCUA----------------------------- ((((((..((.....))((((((((..(((......)))..))))))))..)))))).......----........----------------------------- ( -18.20, z-score = -0.87, R) >consensus UUGCUGCAGCCGCCAACGUGGCACUAAUUAGAAGUAUAAAAGGUGCCACAACAACAGUUAGAGA____GCAGCAUCAUCCUUCUUCCCCCU______________ .(((((...........((((((((..(((......)))..))))))))(((....)))..........)))))............................... (-14.38 = -14.74 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:49 2011