Locus 11694

Sequence ID dm3.chr3R
Location 23,160,132 – 23,160,276
Length 144
Max. P 0.965663
window16065 window16066

overview

Window 5

Location 23,160,132 – 23,160,244
Length 112
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 92.36
Shannon entropy 0.12869
G+C content 0.38546
Mean single sequence MFE -31.64
Consensus MFE -26.50
Energy contribution -27.70
Covariance contribution 1.20
Combinations/Pair 1.09
Mean z-score -2.61
Structure conservation index 0.84
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.75
SVM RNA-class probability 0.965663
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23160132 112 - 27905053
--GUAUAUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGUAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUUCAUUUCAUGGAGUUCCCAU
--....((((((((....))))))))(((((((......)))))))(((...(((.(((....))).)))........((((((((.(((((....)))))))))))))))).. ( -30.80, z-score =  -2.53, R)
>droSim1.chr3R 22909263 114 - 27517382
GUAUAUGUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUACCAU
......((((((((....))))))))(((((((......))))))).((((((..((((.(((((.......)))))))))(((((.(((((....)))))))))))))))).. ( -34.70, z-score =  -3.09, R)
>droSec1.super_13 1912347 114 - 2104621
GUAUAUGUAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGCGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUACCAU
......((((((((....))))))))(((((((......))))))).((((((..((((.(((((.......)))))))))(((((.(((((....)))))))))))))))).. ( -36.90, z-score =  -3.70, R)
>droYak2.chr3R 5500092 104 + 28832112
----------GUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUCCCAU
----------((((....))))....(((((((......)))))))(((.(((..((((.(((((.......)))))))))(((((.(((((....)))))))))))))))).. ( -27.90, z-score =  -1.74, R)
>droEre2.scaffold_4820 5598310 104 + 10470090
----------GUACAUAAGUACAUAUGCAUCGCAUUCAAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUCCCAU
----------((((....))))....(((((((......)))))))(((.(((..((((.(((((.......)))))))))(((((.(((((....)))))))))))))))).. ( -27.90, z-score =  -1.97, R)
>consensus
___UAU_UAUGUACAUAAGUACAUAUGCAUCGCAUUCGAGUGAUGUGGGUGGCAAAUUGCGAGCAAAUUAAGUGUUUCAAUUCCGUUGAGAUUUCCAUUUCAUGGAGUUCCCAU
......((((((((....))))))))(((((((......)))))))((((.((.....))..))..............((((((((.(((((....))))))))))))).)).. (-26.50 = -27.70 +   1.20)

alignment

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secondary structure

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dotplot

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Window 6

Location 23,160,170 – 23,160,276
Length 106
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 91.18
Shannon entropy 0.14871
G+C content 0.43499
Mean single sequence MFE -25.54
Consensus MFE -18.80
Energy contribution -19.16
Covariance contribution 0.36
Combinations/Pair 1.12
Mean z-score -2.49
Structure conservation index 0.74
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 0.95
SVM RNA-class probability 0.859514
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 23160170 106 + 27905053
AACACUUAAUUUGCUCGCAAUUUACCACCCACAUCACUCGAAUGCGAUGCAUAUGUACUUAUGUACAU--AUAUACUACGUGCACCUGACAGAGAAUGAGACAAAGCC
.........((((((((((............((((.(......).)))).((((((((....))))))--))........)))..((.....))...))).))))... ( -19.40, z-score =  -1.70, R)
>droSim1.chr3R 22909301 108 + 27517382
AACACUUAAUUUGCUCGCAAUUUGCCACCCACAUCACUCGAAUGCGAUGCAUAUGUACUUAUGUACAUACAUAUACUACGUGCACCUGGCAGAGAAUGAGACAAAGCC
.........((((((((...(((((((..((((((.(......).)))...(((((((....)))))))..........)))....)))))))...)))).))))... ( -26.40, z-score =  -2.69, R)
>droSec1.super_13 1912385 108 + 2104621
AACACUUAAUUUGCUCGCAAUUUGCCACCCGCAUCACUCGAAUGCGAUGCAUAUGUACUUAUGUACAUACAUAUACUACGUGCACCUGGCAGAGAAUGAGACAAAGCC
.........((((((((...(((((((...(((((.(......).))))).(((((((....))))))).................)))))))...)))).))))... ( -30.90, z-score =  -3.78, R)
>droYak2.chr3R 5500130 98 - 28832112
AACACUUAAUUUGCUCGCAAUUUGCCACCCACAUCACUCGAAUGCGAUGCAUAUGUACUUAUGUAC----------UAUGUGCACCUGGCGGCGAAUGAGACAAAGCC
.........(((((((...(((((((.((........(((....)))(((((((((((....))))----------.)))))))...)).)))))))))).))))... ( -28.70, z-score =  -2.96, R)
>droEre2.scaffold_4820 5598348 98 - 10470090
AACACUUAAUUUGCUCGCAAUUUGCCACCCACAUCACUUGAAUGCGAUGCAUAUGUACUUAUGUAC----------UACGUGCACCUGCCAGGGAAUGAGACAAAGCC
.........(((((((((.....))..(((.((.....))...(((.(((((..((((....))))----------...)))))..)))..)))...))).))))... ( -22.30, z-score =  -1.29, R)
>consensus
AACACUUAAUUUGCUCGCAAUUUGCCACCCACAUCACUCGAAUGCGAUGCAUAUGUACUUAUGUACAU__AUAUACUACGUGCACCUGGCAGAGAAUGAGACAAAGCC
.........((((((((...(((((((..(((.........((((...))))..((((....)))).............)))....)))))))...)))).))))... (-18.80 = -19.16 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:47 2011