| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,157,317 – 23,157,384 |
| Length | 67 |
| Max. P | 0.561670 |
| Location | 23,157,317 – 23,157,384 |
|---|---|
| Length | 67 |
| Sequences | 8 |
| Columns | 67 |
| Reading direction | forward |
| Mean pairwise identity | 80.84 |
| Shannon entropy | 0.37781 |
| G+C content | 0.46053 |
| Mean single sequence MFE | -11.89 |
| Consensus MFE | -9.04 |
| Energy contribution | -9.51 |
| Covariance contribution | 0.47 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.00 |
| Structure conservation index | 0.76 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.14 |
| SVM RNA-class probability | 0.561670 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23157317 67 + 27905053 AAGCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACACAUUCUCCCAUCAAUAAGAUG ..(((((((....(((((...........)))))..)))))))...........((((.....)))) ( -12.60, z-score = -2.04, R) >droSim1.chr3R 22906296 67 + 27517382 AAGCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACACAUUCUCCCAUCAAUAAGAUG ..(((((((....(((((...........)))))..)))))))...........((((.....)))) ( -12.60, z-score = -2.04, R) >droSec1.super_230 11922 67 + 20675 AAGCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCAGACACUCUCCCAUCAAUAGGAUG ..(((((((....(((((...........)))))..)))))))...........((((.....)))) ( -12.50, z-score = -0.85, R) >droYak2.chr3R 5497307 64 - 28832112 GCGCAACAUCCGUCAGUUGCCCUCCAUUAAAUUGUUGUGUUGCACA---CAACCCAUCAAUAAGAUG ..(((((........))))).............((((((.....))---)))).((((.....)))) ( -14.00, z-score = -2.54, R) >droEre2.scaffold_4820 5595669 64 - 10470090 GGGCAACAUCCGUCAGUGGCCCGCCAUUCAAUUGUUGUGUUGCACA---CAUCCCAUCAAUACGAUG ((((.((........)).))))...........(((((((((....---........))))))))). ( -14.60, z-score = -0.13, R) >droAna3.scaffold_13340 4164888 62 - 23697760 ----AGCAUUCGUCAGUUGCCAUCUAUUAAAUUGUUGUGUUGCACAUA-CAACCCAUCAAUACGAAG ----....(((((.((.......)).....((((.((.((((......-)))).)).))))))))). ( -8.00, z-score = -0.16, R) >dp4.chr2 8821448 63 + 30794189 GAGGAACAUCCGUCAGUUGCCAUCCAUUAAAUUGCUGUGUGCCUC----CCUUCCAUCCAUGAGAUG ((((.((((..(.(((((...........)))))).)))).))))----.....((((.....)))) ( -10.90, z-score = -0.38, R) >droPer1.super_0 2634152 63 + 11822988 GAGGAACAUCCGUCAGUUGCCAUCCAUUAAAUUGCUGUGCGCCUC----CCUUCCAUCCAUGAGAUG ((((..(((..(.(((((...........)))))).)))..))))----.....((((.....)))) ( -9.90, z-score = 0.13, R) >consensus GAGCAACAUCCGUCAGUUGCCCGCCAUUAAAUUGUUGUGUUGCACA___CCUCCCAUCAAUAAGAUG ..(((((((....(((((...........)))))..)))))))...........((((.....)))) ( -9.04 = -9.51 + 0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:45 2011