| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,136,091 – 23,136,264 |
| Length | 173 |
| Max. P | 0.924154 |
| Location | 23,136,091 – 23,136,264 |
|---|---|
| Length | 173 |
| Sequences | 9 |
| Columns | 195 |
| Reading direction | reverse |
| Mean pairwise identity | 66.57 |
| Shannon entropy | 0.65445 |
| G+C content | 0.42898 |
| Mean single sequence MFE | -46.54 |
| Consensus MFE | -17.40 |
| Energy contribution | -19.73 |
| Covariance contribution | 2.33 |
| Combinations/Pair | 1.16 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.37 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.31 |
| SVM RNA-class probability | 0.924154 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23136091 173 - 27905053 -----------GGCAAAUAA---CUUGCACAU--UGUAGUCAUGCAAAUCCUU---UCUAACGAGUC---CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCCCGGCUUUGAAUAAUUGAAAGCCAAUGUCCCGUGGC -----------(((......---.(((((...--((....))))))).....(---((....)))..---..........................))).((((.((((((((.((((((((.(((((((....))))......))).)))))))).....((((((.(.....).)))))))))))))).)))) ( -52.70, z-score = -2.88, R) >droWil1.scaffold_181089 3359317 163 - 12369635 -------------------------GGAAAUCCGUCACAAUAUGCACAUUAGUUACUCGAUUGCGUUUUAAAUAAUUAAAUGCAAAUACACCUAGACCUCGCUUUGCGUUGGGGAUACGUU---CCAAAAAAACACGACGCAAACUGAAACGACGCAAAGUGAAUUAAGAUUUUCUAUAGGCAA----CUGUGGC -------------------------((....))((((((...(((....(((..(.((..((((((((.........)))))))).............(((((((((((((.(((.....)---)).........((........))...))))))))))))).....)).)..)))...))).----.)))))) ( -40.90, z-score = -2.40, R) >droPer1.super_0 2598367 136 - 11822988 ---------------------------------------ACCUUCACUCUGCA---CUUAAGAAAUCUAUUUGAAGUAAAUACGAAUCUUCUUG----CGGAGAGGGGGCGUUAAUGGGUUUAGCAGCGGAAAUCCGCUACACAUGAAAAGUCCAUAGUC-GGCUUUGAAUAAUUGAAAGACC------------ ---------------------------------------.(((((.(((((((---...((((..((((((((...)))))).)).))))..))----))))).)))))........(((((..((((((....)))))....((..((((((.......-))))))..))....)..)))))------------ ( -34.70, z-score = -1.05, R) >dp4.chr2 8785673 147 - 30794189 ---------------------------------------ACCUUCACUCUGCA---CUUAGGAAAUCGAUUUGAAGUAAAUACAAAUCUUCUGG----CGGAGA-GGGGCGUUAAUGGGUUUAGCAGCGGAAAUCCGCUACACAUGAAAAGUCCAUAGUC-AGCUUUGAAUAAUUGAAAGACCGUGUCCCAUUGC ---------------------------------------((((((.((((((.---....((((...((((((.........)))))))))).)----))))).-)))).))(((((((....(.(((((....))))).)(((((....(((.....((-((.((.....))))))..))))))))))))))). ( -37.70, z-score = -0.50, R) >droAna3.scaffold_13340 4143126 188 + 23697760 GUGGCAUGGCCGGUAAUUGAAGGCCGGUCUUUGCUGUUGUUUUACAAAUCCUU---UCUAACGAGUG---CUGAAUUAAAUAUAAACCUCAUCAACGCCUGCCACGGGGCGUUAAUGGAUUUAUCAGCGGAAAUCCGCUACAAAUGUAUAGACCAUAGUU-GGCUUUGAAUAAUUAAAAGCAAAUGUCCCAUGGC ..(((..(((((((........))))))).(((.((..((((......((..(---((....)))..---..)).........))))..)).))).))).((((.((((((((.((((.(((((.(((((....)))))((....)))))))))))....-.(((((.........))))).)))))))).)))) ( -53.86, z-score = -1.40, R) >droEre2.scaffold_4820 5574831 173 + 10470090 -----------GGCAAAUAG---CUUGCACUU--UGUAGUCAUGCAAAUCCUU---UCUAACGAGCC---CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUGGCUCGGCUUUGAAUAAUUGAAAGGCAAUGUCCCGUGGC -----------(((.....(---((((...((--((((....)))))).....---.....))))).---.((((...............))))..))).((((.((((((((.((((((((.(((((((....))))......))).))))))))......(((((..........))))))))))))).)))) ( -50.38, z-score = -1.15, R) >droYak2.chr3R 5476187 173 + 28832112 -----------GGCAAAUAA---CUUGCACUU--UGUAGUCAUGCAAAUCCCU---UCUAACGAGCC---CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCUCGGCUUUGAAUAAUUGAAAGCCAAUGUCCCGUGGC -----------(((......---...((..((--((((....)))))).....---((....)))).---.((((...............))))..))).((((.((((((((.((((((((.(((((((....))))......))).)))))))).....((((((.(.....).)))))))))))))).)))) ( -54.16, z-score = -3.14, R) >droSec1.super_13 1889639 158 - 2104621 -----------GGCAAAUAA---CU-----------------UGCAAAUCCUU---UCUAACGAGUC---CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCCCGGCAUUGAAUAAUUGAAAGCCAAUGUCCCGUGGC -----------(((.....(---((-----------------((.........---.....))))).---.((((...............))))..))).((((.((((((((.((((((((.(((((((....))))......))).)))))))).....(((.((.(.....).)).))))))))))).)))) ( -45.90, z-score = -2.27, R) >droSim1.chr3R_random 62208 173 - 1307089 -----------GGCAAAUAA---CUUGCACAU--UGUAGUCAUGCAAAUCCUU---UCUAACGAGUC---CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCCCGGCAUUGAAUAAUUGAAAGCCAAUGUCCCGUGGC -----------(((......---.(((((...--((....))))))).....(---((....)))..---..........................))).((((.((((((((.((((((((.(((((((....))))......))).)))))))).....(((.((.(.....).)).))))))))))).)))) ( -48.60, z-score = -1.83, R) >consensus ___________GGCAAAUAA___CUUGCACUU__UGUAGUCAUGCAAAUCCUU___UCUAACGAGUC___CUGAAUUAAAUAUAAACCUUUUCAACGCCUGCCAGGGGGCGUUAAUGGAUUUAGCAGCGGAAAUCCGCUACAAAUGUAAAGUCCAUAGCCCGGCUUUGAAUAAUUGAAAGCCAAUGUCCCGUGGC ....................................................................................................((((.((((((((((.....)))))(((((....)))))..............................................))))).)))) (-17.40 = -19.73 + 2.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:43 2011