| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,114,648 – 23,114,762 |
| Length | 114 |
| Max. P | 0.879699 |
| Location | 23,114,648 – 23,114,762 |
|---|---|
| Length | 114 |
| Sequences | 12 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 79.69 |
| Shannon entropy | 0.45113 |
| G+C content | 0.49708 |
| Mean single sequence MFE | -28.77 |
| Consensus MFE | -20.36 |
| Energy contribution | -20.63 |
| Covariance contribution | 0.27 |
| Combinations/Pair | 1.43 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.04 |
| SVM RNA-class probability | 0.879699 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23114648 114 + 27905053 AUCAUGGGCCUGCUAUAUGCGCUGCGCGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCCUCAUCAUCCUAAUGCCCGGUCUGCCGCCGCGCACCACCUUCCCCUUCAAGGAC ....(((((..((.....))))((((((.((((((((((.....)))))))))).......................(((....))).)))))))))((((.......)))).. ( -31.00, z-score = -1.21, R) >droGri2.scaffold_15074 758821 114 - 7742996 ACAAUGGGCCUGCUCAAAGCGUUGCGUGUGCGAAUCAUGAAUUUCAUGAUAUUCUAUCUAAUUGUUAUUCUGUUGCCCGGUUUGCCACCGCGCACCACUUUCCCCUACAAGGAA .....(((...((.....))..((.(((((((.((((((.....))))))............................((....))..))))))))).....)))......... ( -25.40, z-score = -0.02, R) >droMoj3.scaffold_6540 20081525 114 - 34148556 AUCAUGGGACUGUUGCGGUCAAUACGUCUGAGAAUUAUGAAUUUCAUGAUUUUCUUUCUAUUUAUUAUUUUGUUCCCGGGUCUGCCCCCGCGCACAACUUUCCCCUAUAAAGAU .....((((.((((((((...........((((((((((.....)))))))))).......................(((....)))))))).)))....)))).......... ( -27.50, z-score = -2.00, R) >droVir3.scaffold_13047 17616535 114 + 19223366 GCCAUGGGUCUGCUGAAGGCGUUGCGUGUGAGGAUCAUGAAUUUCAUGAUUUUCUUUCUAAUUAUCAUUUUGCUGCCGGGUCUGCCCCCACGCACCACUUUCCCCUAUAAAGAU .....(((......(((((.(.((((((.((((((((((.....)))))))))).......................(((....))).)))))).).))))))))......... ( -32.80, z-score = -1.59, R) >droWil1.scaffold_181089 3338918 114 + 12369635 AAAAUGGGCCUGUUUUAUGCGCUGCAGUUAAGAAUCAUGAAUUUCAUGAUAUUCUUCUUGAUAAUUAUCCUUCUGCCCGGUCUACCACCCCGCACGACAUUCCCCUACAAAGAU .....(((..((((...((((..((((((((((((((((.....)))))).....))))))...........))))..((....))....)))).))))..))).......... ( -23.80, z-score = -1.68, R) >droPer1.super_0 2578471 114 + 11822988 ACCAUGGGCCUGCUUCGAGCCUUGCGUUUGAGAAUCAUGAACUUCAUGGUUUUCUUCCUAAUAGUUAUAAUCCUGCCCAACGUGCCGCCUCGCACCACUUUCCCCUACAAAGAA ....(((((........(((..(......((((((((((.....))))))))))......)..)))........)))))..((((......))))................... ( -24.99, z-score = -1.44, R) >dp4.chr2 8765686 114 + 30794189 ACCAUGGGCCUGCUUCGAGCCUUGCGUUUGAGAAUCAUGAAUUUCAUGGUUUUCUUCCUGAUAGUUAUAAUCCUGCCCAACAUGCCGCCUCGCACCACUUUCCCCUACAAAGAA ....(((((........(((.........((((((((((.....)))))))))).........)))........)))))...(((......))).................... ( -21.96, z-score = -0.25, R) >droAna3.scaffold_13340 4121090 114 - 23697760 AUCAUGGGUCUGCUGUAUGCUCUACGCGUGAGGAUCAUGAAUUUCAUGAUCUUCUUUCUGAUUAUCAUUCUGCUGCCCGGUCUGCCUCCCCGUACCACCUUUCCCUUCAAGGAA .....((((..((...((((.....))))((((((((((.....)))))))))).................)).))))(((.((......)).))).((((.......)))).. ( -29.70, z-score = -1.84, R) >droEre2.scaffold_4820 5551038 114 - 10470090 AUCAUGGGCCUGUUGUACGCGCUGCGUGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCAUCAUCAUCCUGAUGCCCGGUCUGCCGCCGCGCACCACCUUCCCCUUCAAGGAC .....(((...((.((..((((.(((.((((((((((((.....))))))))))..((.(((((......)))))...))...))))).)))))).))...))).......... ( -33.00, z-score = -1.09, R) >droYak2.chr3R 5453467 114 - 28832112 AUCAUGGGCCUGCUGUACGCGCUGCGUGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCAUCAUCAUCCUAAUGCCCGGUCUGCCGCCGCGCACGACCUUUCCCUUCAAGGAC .....((((.......((((...))))((((((((((((.....)))))......)))))))............))))(((((((......))).))))..(((......))). ( -33.10, z-score = -1.27, R) >droSec1.super_13 1868826 114 + 2104621 AUCAUGGGCCUGCUAUACGCGCUGCGCGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCCUCAUCAUCCUAAUGCCCGGUCUUCCGCCGCGCACCACCUUCCCCUUCAAGGAC ....(((((..((.....))))((((((.((((((((((.....)))))))))).......................(((....))).)))))))))((((.......)))).. ( -29.70, z-score = -1.36, R) >droSim1.chr3R_random 44445 114 + 1307089 AUCAUGGGCCUGCUAUACGCGCUGCGCGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCCUCAUCAUCCUAAUGCCCGGUCUGCCGCCGCGCACCACCUUCCCCUUCAAGGAC .....((((.......(((((...)))))((((((((((.....))))))))))....................))))(((.(((....))).))).((((.......)))).. ( -32.30, z-score = -1.72, R) >consensus AUCAUGGGCCUGCUGUACGCGCUGCGUGUGAGGAUCAUGAACUUCAUGAUUUUCUUCCUCAUCAUCAUCCUGAUGCCCGGUCUGCCGCCGCGCACCACCUUCCCCUACAAGGAC .....(((...((.....))..(((((..((((((((((.....)))))))))).......................(((....)))..)))))........)))......... (-20.36 = -20.63 + 0.27)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:40 2011