| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,109,441 – 23,109,557 |
| Length | 116 |
| Max. P | 0.500000 |
| Location | 23,109,441 – 23,109,557 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 129 |
| Reading direction | forward |
| Mean pairwise identity | 78.49 |
| Shannon entropy | 0.35557 |
| G+C content | 0.46514 |
| Mean single sequence MFE | -35.12 |
| Consensus MFE | -23.56 |
| Energy contribution | -22.80 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.28 |
| Mean z-score | -1.35 |
| Structure conservation index | 0.67 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>dm3.chr3R 23109441 116 + 27905053 CAAGUUUUUAGAUAACGAAAAGCCAUCGAUUAUCGAUUACCGCGCAAUUAUCGUAGCGCAGUGGCCGGUUUU--GUGGAGCCCUGGUUGUGGUAAGACGAAAGUU-----------GUGAGAAUUGAGA ..((((((((((((((((.......))).)))))..(((((((((..........)))).(..((((((((.--...)))))..)))..))))))(((....)))-----------.)))))))).... ( -32.20, z-score = -1.61, R) >droEre2.scaffold_4820 5545717 122 - 10470090 CAAGUUUUUUUUUGAU----AACGAAGACUUAUCGAUUAUCGUGAA-UUAUCGCAGCGCUGCGGCCGGUGUU--GUGGAGCCCUGGUUGGGGUAAGACGAAAGUUCUGCGCCCCUCGCGAAAAUUGAGU .((((((((.((....----)).)))))))).((((((.((((((.-...(((((((((((....)))))))--))))(((....)))(((((.((((....).)))..))))))))))).)))))).. ( -45.40, z-score = -3.32, R) >droYak2.chr3R 5448117 125 - 28832112 CAAGUUUUUUUUUGAU----AACAAAGACUUAUCGAUUACUGCGCGCUUAUCGCCGCUCAGCGGGUGGUUUUUUGUGGAGCCCUGGUUGGGGUAAAACGAAAGUUCUGCGCCCCUCGCGAGAAUUGAGU .((((((((.((....----)).)))))))).((((((.((.((((......((..((((((.((.((((((....)))))))).))))))(((.(((....))).)))))....)))))))))))).. ( -37.90, z-score = -0.60, R) >droSec1.super_13 1863582 116 + 2104621 CAAGUUUUUAGAUAACGAAGAGCUAUCGAUUAUCGAUUACCGCGCAAUUAUCGCAGUGUAGUGGCCGGUUUG--GUGGAGCCCUGGUUGGGGUAAGACGAAAGUU-----------GUGAGAAUUGAGA ..((((((((............(((((((..((((..(((..(((..........)))..)))..)))))))--)))).(((((....)))))..(((....)))-----------.)))))))).... ( -28.60, z-score = -0.37, R) >droSim1.chr3R_random 38173 116 + 1307089 CAAGUUUUUAGAUAACGAAUAGCUAUCGAUUAUCGAUUACCGCGCAAUUAUCGCAGCGCAGUGGCCGGUUUU--GUGGAGCCCUGGUUGGGGUAAGACGAAAGUU-----------GUGAGAAUUGAGA ..........((((.(.....).)))).....((((((..(((....(((((.((((.(((.((((.(....--.).).)))))))))).)))))(((....)))-----------)))..)))))).. ( -31.50, z-score = -0.87, R) >consensus CAAGUUUUUAGAUAACGAA_AGCUAUCGAUUAUCGAUUACCGCGCAAUUAUCGCAGCGCAGUGGCCGGUUUU__GUGGAGCCCUGGUUGGGGUAAGACGAAAGUU___________GUGAGAAUUGAGA ................................((((((..(((....(((((.((((.(((.((((.(.......).).)))))))))).)))))(((....)))...........)))..)))))).. (-23.56 = -22.80 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:39 2011