| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,107,517 – 23,107,608 |
| Length | 91 |
| Max. P | 0.529701 |
| Location | 23,107,517 – 23,107,608 |
|---|---|
| Length | 91 |
| Sequences | 8 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 81.68 |
| Shannon entropy | 0.32030 |
| G+C content | 0.43630 |
| Mean single sequence MFE | -24.88 |
| Consensus MFE | -19.15 |
| Energy contribution | -17.32 |
| Covariance contribution | -1.82 |
| Combinations/Pair | 1.44 |
| Mean z-score | -1.18 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.07 |
| SVM RNA-class probability | 0.529701 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23107517 91 - 27905053 -----UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAA------AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC--GCU------- -----...(((.((((....((((((((((..((((((((((..------.......)))))))..)))..)).))))))))...))))))).......--...------- ( -22.80, z-score = -0.87, R) >droSim1.chr3R_random 36194 91 - 1307089 -----UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAA------AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC--GCU------- -----...(((.((((....((((((((((..((((((((((..------.......)))))))..)))..)).))))))))...))))))).......--...------- ( -22.80, z-score = -0.87, R) >droSec1.super_13 1861630 91 - 2104621 -----UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUAAAAA------AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC--GCU------- -----...(((.((((....(((((((..((((((..((((...------.))))..)))))).(((.....))))))))))...))))))).......--...------- ( -21.70, z-score = -0.44, R) >droYak2.chr3R 5446009 91 + 28832112 -----UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAA------AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC--GCU------- -----...(((.((((....((((((((((..((((((((((..------.......)))))))..)))..)).))))))))...))))))).......--...------- ( -22.80, z-score = -0.87, R) >droEre2.scaffold_4820 5543546 91 + 10470090 -----UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAA------AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC--GCU------- -----...(((.((((....((((((((((..((((((((((..------.......)))))))..)))..)).))))))))...))))))).......--...------- ( -22.80, z-score = -0.87, R) >droAna3.scaffold_13340 4114155 105 + 23697760 UUCGGUUUUUGUAGGCCCGUUUGUCGGU--UUUGAGUUUUGAAAUCC-GUUUCACUAUUGGAAUCGUCGUUAACGGCGACGG---GUCUCAAAUUCGGCCAGCUCUCCACU ...((((((((.(((((((((....(((--((..(....(((((...-.)))))...)..)))))((((....)))))))))---))))))))...))))........... ( -33.50, z-score = -2.28, R) >dp4.chr2 21106064 95 + 30794189 -----AUUUUGUAGGCCCGUUCGUCGCU--UUCGAGUUUUGAAAUUCAGUAUCAGUAUUGAAAUCGUCGUUAGCGACGGUGG-UUGCUUCGAUUCCGCC--GUUG------ -----........(((....(((..((.--.((...........(((((((....)))))))(((((((....)))))))))-..))..)))....)))--....------ ( -26.30, z-score = -1.64, R) >droPer1.super_0 10793215 95 - 11822988 -----AUUUUGUAGGCCCGUUCGUCGCU--UUCGAGUUUUGAAAUUCAGUAUCAGUAUUGAAAUCGUCGUUAGCGACGGUGG-UUGCUUCGAUUCCGCC--GUUG------ -----........(((....(((..((.--.((...........(((((((....)))))))(((((((....)))))))))-..))..)))....)))--....------ ( -26.30, z-score = -1.64, R) >consensus _____UUUUUGUAGGCCCGUUCGUCGCUUUUUCGAGUUUUAAAA______AUUAGUAUUGAAAUCGUCGUUAACGGCGACGGUUUGCCUCAGUUUUGAC__GCU_______ ........(((.((((....(((((.....(((((...((((.........))))..)))))...((((....)))))))))...)))))))................... (-19.15 = -17.32 + -1.82)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:37 2011