| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,068,724 – 23,068,843 |
| Length | 119 |
| Max. P | 0.731570 |
| Location | 23,068,724 – 23,068,843 |
|---|---|
| Length | 119 |
| Sequences | 10 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 79.22 |
| Shannon entropy | 0.45342 |
| G+C content | 0.64156 |
| Mean single sequence MFE | -53.67 |
| Consensus MFE | -33.14 |
| Energy contribution | -33.17 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.55 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.62 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.53 |
| SVM RNA-class probability | 0.731570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23068724 119 - 27905053 CAACUUCAUGGCCUCAUCGGCGGCCGUGGCGGCGGUGGCUGCCGCUGCCUCAGCCCGCCUGGCGGAUAACAACAUGGAUCAGCAAAUGAACACGGCUGCCGGUGGAAGCGGUGGCAGUG ..(((((((.((.(((((((((((((((((((((((....))))))))).....((((...)))).............(((.....)))..))))))))))))))..)).)))).))). ( -58.00, z-score = -1.95, R) >droAna3.scaffold_13340 4074613 119 + 23697760 CAAUUUUAUGUCCUCCUCGGCUGCUGUGGCAGCAGUGGCUGCAGCUGCCUCUGCUCGUCUGGCGGAUAACAACAUGGACCAGCAGAUGAACACCGCCGCUGGAGGUAGUGGAGCCAGUG ...((((((..(((((.((((.(.(((((((((.((....)).))))))((((((.(((((..(........).))))).))))))...)))).))))..)))))..))))))...... ( -45.10, z-score = -0.15, R) >droEre2.scaffold_4820 5504608 119 + 10470090 CAACUUCAUGGCCUCCUCGGUGGCCGUGGCGGCGGUGGCUGCCGCUGCCUCGGCCCGCCUUGCAGAUAACAACAUGGAUCAGCAAAUGAACACGGCUGCCGGAGGAAGCGGCGCCAGUG ....(((((.........((((((((.(((((((((....))))))))).))).)))))((((.(((..........))).)))))))))((((((.((((.......))))))).))) ( -53.60, z-score = -1.04, R) >droYak2.chr3R 5407211 119 + 28832112 CAACUUCAUGGCCUCCUCGGCGGCCGUGGCGGCGGUGGCUGCCGCUGCCUCGGCCCGCCUGGCGGAUAACAACAUGGAUCAGCAAAUGAACACGGCUGCCGGGGGAAGCGGCGGCAGUG ....((((((.((.((..((((((((.(((((((((....))))))))).))).))))).)).)).......))))))(((.....))).(((.(((((((.......))))))).))) ( -61.50, z-score = -1.96, R) >droSec1.super_13 1823100 119 - 2104621 CAACUUCAUGGCCUCCUCGGCGGCCGUGGCGGCGGUAGCUGCCGCUGCCUCGGCCCGCCUGGCGGAUAAUAACAUGGAUCAGCAAAUGAACACGGCUGCCGGUGGAAGCGGCGGCAGUG ....((((((.((.((..((((((((.(((((((((....))))))))).))).))))).)).)).......))))))(((.....))).....(((((((.((....)).))))))). ( -61.50, z-score = -2.62, R) >droPer1.super_0 10750035 113 - 11822988 CAACUUCAUGACCUCCUCGGCGGCCGUGGCGGCGGUGGCUGCCGCUGCAUCCGCUCGCCUCGCGGACAACAACAUGGAGCAGCAGAUGAAU---GCUGCGGGCGGCAGUGGGGCCA--- ...((((((..((.(((......(((((((((((((....)))))))).(((((.......)))))......))))).((((((......)---)))))))).))..))))))...--- ( -51.70, z-score = -0.31, R) >dp4.chr2 21063464 113 + 30794189 CAACUUCAUGACCUCCUCGGCGGCCGUGGCGGCGGUGGCUGCCGCUGCAUCCGCUCGCCUCGCGGACAACAACAUGGAGCAGCAGAUGAAU---GCUGCGGGCGGCAGUGGGGCCA--- ...((((((..((.(((......(((((((((((((....)))))))).(((((.......)))))......))))).((((((......)---)))))))).))..))))))...--- ( -51.70, z-score = -0.31, R) >droWil1.scaffold_181108 4337984 107 + 4707319 UAAUUUUAUGGCCUCAUCGGCCGCUGUUGCGGCAGUGGCUGCUGCUGCAUCCGCUCGGCUAGCUGAUAGCAAUAUGGAACAGCAAAUG---AAUGCUGCUGGCGCCAGUU--------- ....(((((((((.....))))((((((((((((((....)))))))))((((....((((.....))))....)))))))))..)))---))....((((....)))).--------- ( -41.50, z-score = -0.56, R) >droVir3.scaffold_12855 1769199 116 - 10161210 CAAUUUUAUGGCCUCAUCGGCGGCGGUGGCAGCUGUUGCGGCUGCUGCCUCGGCACGCCUCGCCGACAGCAACAUGGAGCAACAAAUGCAAAAUGCGGCUGGCGCCAGUGGUGCCG--- .........(((.((((.((((..((..(((((((...)))))))..))(((((.......)))))((((..(((...(((.....)))...)))..)))).)))).)))).))).--- ( -53.90, z-score = -1.49, R) >droGri2.scaffold_14830 155359 116 - 6267026 CAAUUUUAUGGCAUCAUCGGCGGCAGUGGCAGCUGUGGCGGCUGCGGCUUCCGCACGCCUUGCCGACAGCAACAUGGAGCAGCAAAUGCAGAAUGCGGCAGGCGCCAGUGGUGCCG--- .........((((((((.((((.(.((.(((((((((((((((((((...))))).)))..))).)))))........(((.....)))....))).)).).)))).)))))))).--- ( -58.20, z-score = -2.46, R) >consensus CAACUUCAUGGCCUCCUCGGCGGCCGUGGCGGCGGUGGCUGCCGCUGCCUCCGCCCGCCUGGCGGAUAACAACAUGGAGCAGCAAAUGAACACGGCUGCCGGCGGCAGUGGCGCCA___ ..........(((.(...((((((.(.(((((((((....))))))))).).)).))))((((((.......(((..........))).......))))))......).)))....... (-33.14 = -33.17 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:33 2011