| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,056,880 – 23,056,932 |
| Length | 52 |
| Max. P | 0.666431 |
| Location | 23,056,880 – 23,056,932 |
|---|---|
| Length | 52 |
| Sequences | 3 |
| Columns | 52 |
| Reading direction | forward |
| Mean pairwise identity | 94.81 |
| Shannon entropy | 0.07064 |
| G+C content | 0.41487 |
| Mean single sequence MFE | -11.17 |
| Consensus MFE | -11.61 |
| Energy contribution | -11.17 |
| Covariance contribution | -0.44 |
| Combinations/Pair | 1.13 |
| Mean z-score | -0.58 |
| Structure conservation index | 1.04 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.38 |
| SVM RNA-class probability | 0.666431 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23056880 52 + 27905053 GUAUACUUUCCUCUAAAAGGAUCUGGUCUACGGAGUAAAGGCAUCCUAUAUA (((.(((.((((.....))))...))).)))(((((....)).)))...... ( -10.50, z-score = -0.81, R) >droSim1.chr3R 22870495 50 + 27517382 GUAUACUUUCCUCUAAAGGGAUCUGGUCUACGGAGUAAAGGCAUCCUAUA-- (((.(((.((((.....))))...))).)))(((((....)).)))....-- ( -10.50, z-score = -0.30, R) >droSec1.super_13 1811215 50 + 2104621 GUAUACUUUCCCCUAAAGGGAUCUGGUCUACGGAGUAAAGGCAUCCUAUA-- (((.(((.((((.....))))...))).)))(((((....)).)))....-- ( -12.50, z-score = -0.62, R) >consensus GUAUACUUUCCUCUAAAGGGAUCUGGUCUACGGAGUAAAGGCAUCCUAUA__ (((.(((.((((.....))))...))).)))(((((....)).)))...... (-11.61 = -11.17 + -0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:32 2011