| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,043,467 – 23,043,521 |
| Length | 54 |
| Max. P | 0.722234 |
| Location | 23,043,467 – 23,043,521 |
|---|---|
| Length | 54 |
| Sequences | 3 |
| Columns | 54 |
| Reading direction | reverse |
| Mean pairwise identity | 100.00 |
| Shannon entropy | -0.00000 |
| G+C content | 0.57407 |
| Mean single sequence MFE | -17.30 |
| Consensus MFE | -17.30 |
| Energy contribution | -17.30 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.13 |
| Structure conservation index | 1.00 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.51 |
| SVM RNA-class probability | 0.722234 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23043467 54 - 27905053 CCGCCACUCUGGCGUUGAACGGACUGAGCUCGGGCUCGCUUCUUUUAGUUCGAU .((((.....))))(((((((((.(((((....))))).))).....)))))). ( -17.30, z-score = -1.13, R) >droSec1.super_13 1797888 54 - 2104621 CCGCCACUCUGGCGUUGAACGGACUGAGCUCGGGCUCGCUUCUUUUAGUUCGAU .((((.....))))(((((((((.(((((....))))).))).....)))))). ( -17.30, z-score = -1.13, R) >droSim1.chr3R 22856640 54 - 27517382 CCGCCACUCUGGCGUUGAACGGACUGAGCUCGGGCUCGCUUCUUUUAGUUCGAU .((((.....))))(((((((((.(((((....))))).))).....)))))). ( -17.30, z-score = -1.13, R) >consensus CCGCCACUCUGGCGUUGAACGGACUGAGCUCGGGCUCGCUUCUUUUAGUUCGAU .((((.....))))(((((((((.(((((....))))).))).....)))))). (-17.30 = -17.30 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:31 2011