| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,037,415 – 23,037,505 |
| Length | 90 |
| Max. P | 0.988299 |
| Location | 23,037,415 – 23,037,505 |
|---|---|
| Length | 90 |
| Sequences | 7 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 93.63 |
| Shannon entropy | 0.12549 |
| G+C content | 0.47469 |
| Mean single sequence MFE | -24.87 |
| Consensus MFE | -23.60 |
| Energy contribution | -23.50 |
| Covariance contribution | -0.10 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.95 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.31 |
| SVM RNA-class probability | 0.988299 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23037415 90 - 27905053 -------AGAAACGUAACCGAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGAACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC -------..........((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))).)).. ( -24.30, z-score = -2.57, R) >droSim1.chr3R 22850623 90 - 27517382 -------AGAAACGUAACCGAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC -------..........((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))).)).. ( -24.70, z-score = -2.45, R) >droSec1.super_13 1791971 90 - 2104621 -------AGAAACGUAACCGAGUCAGCGAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC -------..........((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..))))).)).. ( -24.70, z-score = -2.17, R) >droYak2.chr3R 5376587 90 + 28832112 -------AGAAACGAAACCGAGUCAGCUAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC -------..........((...((((((..........(((..(((((....).))))..)))((((..((((....)))))))).)))))).)).. ( -25.40, z-score = -2.61, R) >droEre2.scaffold_4820 5470622 90 + 10470090 -------AGAAACGUAACCGAGUCAGCUAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC -------..........((...((((((..........(((..(((((....).))))..)))((((..((((....)))))))).)))))).)).. ( -25.40, z-score = -2.47, R) >droAna3.scaffold_12911 3976527 89 - 5364042 --------GAAACGUAACCAAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCAGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGUAC --------........(((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..)))))))).. ( -24.50, z-score = -3.19, R) >dp4.chr2 8662003 97 - 30794189 GAGAAACAGAAACGUAACCGAGUCACCGAAAUAAAAAGGUUAAUUGAGGAAACAUCGGUGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGACC ....(((.....(((.(((((...(((..........))).......(....).)))))..)))((.((((((....))))))))..)))....... ( -25.10, z-score = -1.65, R) >consensus _______AGAAACGUAACCGAGUCAGCAAAAUAAAAAGGUUAAUUGAGGAAACAUCAGCGGACGGGCGUGAUGUGAGCAUCGCCCAAGUUGAGGGAC .................((...(((((...........(((..(((((....).))))..)))((((..((((....))))))))..)))))))... (-23.60 = -23.50 + -0.10)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:31 2011