| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,009,423 – 23,009,502 |
| Length | 79 |
| Max. P | 0.680759 |
| Location | 23,009,423 – 23,009,502 |
|---|---|
| Length | 79 |
| Sequences | 4 |
| Columns | 79 |
| Reading direction | reverse |
| Mean pairwise identity | 96.62 |
| Shannon entropy | 0.05374 |
| G+C content | 0.50000 |
| Mean single sequence MFE | -25.10 |
| Consensus MFE | -24.39 |
| Energy contribution | -24.83 |
| Covariance contribution | 0.44 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.680759 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23009423 79 - 27905053 UGCUCGUUACCACAGCCCCGUGUUACAAGUUGCAAGUUGCUAGUUGCAUGUUGCUUGUUGCACGCGGCUCGUUAUUGUU ...........((((((.(((((.((((((.(((...(((.....)))))).)))))).))))).)))).))....... ( -26.60, z-score = -1.85, R) >droYak2.chr3R 5348040 79 + 28832112 UGCUCGUUACCACAGCCCCUUGUUGCAAGCUGCAAGUUGCUAGUUGCAUGUUGCUUGUUGCACGCUGCUCGUUAUUGUU ............((((....(((.((((((.(((...(((.....)))))).)))))).))).))))............ ( -19.60, z-score = 0.69, R) >droSec1.super_13 1764537 79 - 2104621 UGCUCGUUACCACAGCCCCGUGUUGCAAGCUGCAAGUUGCUAGUUGCAUGUUGCUUGUUGCACGCGGCUCGUUAUUGUU ...........((((((.(((((.((((((.(((...(((.....)))))).)))))).))))).)))).))....... ( -28.40, z-score = -1.58, R) >droSim1.chr3R 22828631 79 - 27517382 UGCUCGUUACCACAGCCCCGUGUUGCAAGUUGCAAGUUGCUAGUUGCAUGUUUCUUGUUGCACGCGGCUCGUUAUUGUU ...........((((((.(((((.(((((..(((...(((.....))))))..))))).))))).)))).))....... ( -25.80, z-score = -1.94, R) >consensus UGCUCGUUACCACAGCCCCGUGUUGCAAGCUGCAAGUUGCUAGUUGCAUGUUGCUUGUUGCACGCGGCUCGUUAUUGUU ...........((((((.(((((.((((((.(((...(((.....)))))).)))))).))))).)))).))....... (-24.39 = -24.83 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:28 2011