| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,007,463 – 23,007,526 |
| Length | 63 |
| Max. P | 0.644899 |
| Location | 23,007,463 – 23,007,526 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 64 |
| Reading direction | reverse |
| Mean pairwise identity | 69.70 |
| Shannon entropy | 0.54239 |
| G+C content | 0.38732 |
| Mean single sequence MFE | -10.02 |
| Consensus MFE | -4.89 |
| Energy contribution | -5.09 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.644899 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23007463 63 - 27905053 AAUAACGCUACCAACGCGAAUUG-AAUUGUUCCCAUCACUGCCACUAAAAUGAAAUGGGAAAAG .....(((.......))).....-.....(((((((((.(........).)))..))))))... ( -10.20, z-score = -1.73, R) >droEre2.scaffold_4820 5440845 60 + 10470090 --AACCGCCAGCAAAGCGAAUUG-CAUUUUUCCCAUCACUGCCACUGAAAUGAAAUGGGAAAG- --........((((......)))-)...((((((((((.(........).)))..))))))).- ( -11.40, z-score = -0.74, R) >droSec1.super_13 1762612 62 - 2104621 -AAACCGCUACCAACACGAAUUG-AAUUGUUCCCAUAACUGCCACUAAAAUGUAAUGGGAAAAG -......................-.....(((((((.((............)).)))))))... ( -9.40, z-score = -1.52, R) >droSim1.chr3R 22826697 62 - 27517382 -AAACCGCUACCAACGCGAAUUG-AAUUGUUCCCAUCACUGCCACUAAAAUGAAAUGGGAAAAG -....(((.......))).....-.....(((((((((.(........).)))..))))))... ( -10.00, z-score = -1.51, R) >triCas2.ChLG9 9486595 60 - 15222296 --AACCA--AUUUAUUUGAGCUGUAAGAGGUUCAGGUACUAAGAUAAAGAAUUUGUUGUAAAAA --.....--...((((((((((......)))))))))).......................... ( -9.10, z-score = -0.77, R) >consensus _AAACCGCUACCAACGCGAAUUG_AAUUGUUCCCAUCACUGCCACUAAAAUGAAAUGGGAAAAG .....(((.......)))...........(((((((..................)))))))... ( -4.89 = -5.09 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:27 2011