| Sequence ID | dm3.chr3R |
|---|---|
| Location | 23,003,827 – 23,003,910 |
| Length | 83 |
| Max. P | 0.895598 |
| Location | 23,003,827 – 23,003,910 |
|---|---|
| Length | 83 |
| Sequences | 6 |
| Columns | 103 |
| Reading direction | forward |
| Mean pairwise identity | 63.23 |
| Shannon entropy | 0.69009 |
| G+C content | 0.37682 |
| Mean single sequence MFE | -18.83 |
| Consensus MFE | -7.73 |
| Energy contribution | -7.15 |
| Covariance contribution | -0.58 |
| Combinations/Pair | 1.56 |
| Mean z-score | -1.39 |
| Structure conservation index | 0.41 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.12 |
| SVM RNA-class probability | 0.895598 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 23003827 83 + 27905053 -------UGGCCAUUAGGCCGCAAAUAAGGUCAGAUUGCAGAUCAG-----------ACAACUUUUGACUCAAUUAACCUGUACAAAAUAUUACAUCUAAA-- -------.((((....)))).......((((..(((((.((.((((-----------(.....)))))))))))).)))).....................-- ( -17.60, z-score = -2.27, R) >droSim1.chr3R 22823018 94 + 27517382 -------UGGCCAUUAGGCCGCAAAUAAGGUCAGAUUGCAGAUCAGCAGCAGUUAAGACAACGUUUGACUCAAUUAACCUGUACGAAAUAUUACUUAUAAG-- -------.((((....))))....((((((((.((((((.........))))))..)))....((((((...........)).))))......)))))...-- ( -18.00, z-score = -0.81, R) >droSec1.super_13 1758916 94 + 2104621 -------UGGCCAUUAGGCCACAAAUAAGGUCAGAUUGCAGAUCAGCAGCAGUUAAGACAACUUUUGACUCAAUUAAGCUAUAUGAAAUACUACUUAUAAG-- -------(((((....)))))...(((((....(.((((......)))))((((((((....)))))))).......................)))))...-- ( -17.80, z-score = -0.98, R) >droYak2.chr3R 5342499 82 - 28832112 -------UGGCCAUUAGGCCGCAAAUAAGGUCAGAUUGCCGAUCAGCAGCAGUUAAGACAACUUUUAACUUAAUUAAACUGUACGAAUU-------------- -------.(((.(((.((((........)))).))).))).....((((.(((((((...........)))))))...)))).......-------------- ( -18.00, z-score = -1.60, R) >droEre2.scaffold_4820 5437261 93 - 10470090 -------UGGCCAUUAGGCCGCAAAUAAGGUCAGAUUGCAGAUCAGCAGCAGUUACGAUA-CUUUUAACUCAAUUAAGCAGUAUGAAAUUUUAUAUCUAAG-- -------.((((....))))....(((((((..((((((.........))))))...(((-(((((((.....))))).)))))...))))))).......-- ( -16.60, z-score = -0.47, R) >droGri2.scaffold_15074 6269513 103 - 7742996 CUGCCUGUGUGCCUUAAUGAGCACACUGUAUUGUUCUCCCAUGAUAUGAUGUCUAAGGUAUACUUUUAUCUUACUGCAUUGCUUCAGCUGAAGUUUAUAUCUG .(((..(((((((.....).)))))).)))............((((((((((.(((((((......)))))))..)))))(((((....)))))..))))).. ( -25.00, z-score = -2.23, R) >consensus _______UGGCCAUUAGGCCGCAAAUAAGGUCAGAUUGCAGAUCAGCAGCAGUUAAGACAACUUUUGACUCAAUUAAACUGUACGAAAUAUUACUUAUAAG__ .......(((((....))))).......((((........))))........................................................... ( -7.73 = -7.15 + -0.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:27 2011