| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,990,578 – 22,990,639 |
| Length | 61 |
| Max. P | 0.791804 |
| Location | 22,990,578 – 22,990,639 |
|---|---|
| Length | 61 |
| Sequences | 12 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 73.77 |
| Shannon entropy | 0.60103 |
| G+C content | 0.48224 |
| Mean single sequence MFE | -15.45 |
| Consensus MFE | -7.76 |
| Energy contribution | -7.88 |
| Covariance contribution | 0.12 |
| Combinations/Pair | 1.73 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.791804 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22990578 61 - 27905053 CUUACUCAAGAAGUCCAGUAUAGUCUUGGUUACGCGACGAACGUAUCGUUGUGUUGGCAGU ......(((((............)))))((((((((((((.....)))))))).))))... ( -14.90, z-score = -0.77, R) >droSec1.super_13 1745720 61 - 2104621 CUUACUCAAGAAGUCCAGUAUAGUCUUGGUUACGCGACGAACAUAUCGUUGUGUUGGCAGU ......(((((............)))))((((((((((((.....)))))))).))))... ( -14.90, z-score = -1.09, R) >droYak2.chr3R 5329036 61 + 28832112 CUUACUCAAGAAAUCCAGGAUUGUCUUAGUCACACGACGUACAUAUCGUUGUGUUGGCAGC .......((((((((...)))).)))).(((((((((((.......))))))).))))... ( -15.30, z-score = -1.60, R) >droEre2.scaffold_4820 5423864 61 + 10470090 CUUACUCAAGAAGUCCAGUAUAGUCUUAGUUACGCGACGUACAUAUCGUUGUGUUGGCAGC ............................(((((((((((.......))))))).))))... ( -11.10, z-score = 0.24, R) >droAna3.scaffold_12911 3910088 61 - 5364042 CUUACUGAGGAAGUCCAAAAUAGUUUUGGUUACUCGUCGAACAUAACGCUGGGUGGGUAGC ((((((.((..((((((((.....)))))..)))(((........))))).)))))).... ( -10.40, z-score = 0.70, R) >dp4.chr2 8599164 61 - 30794189 CUUACUCAAGAAAUCCAAAAUGGUUUUCGCCACCCGGCGAACAUAACGCUGAGUGGGAAGC ((((((((.((((.((.....)).))))(((....)))...........)))))))).... ( -18.50, z-score = -2.54, R) >droPer1.super_0 2426531 61 - 11822988 CUUACUCAAAAAAUCCAAAAUGGUUUUCGCCACCCGGCGAACAUAACGCUGAGUGGGAAGC ((((((((......((.....))..((((((....))))))........)))))))).... ( -18.00, z-score = -2.67, R) >droWil1.scaffold_181089 5389340 61 - 12369635 CUUACUCAAAAGAUCCAAGACGGUCUUGGUCACCCGUCGAACAUAGCGCUGAGUGGGUAGC ((((((((...((.(((((.....)))))))...(((........))).)))))))).... ( -16.60, z-score = -0.97, R) >droVir3.scaffold_13047 8128735 61 - 19223366 CUUACUCAAUAAGUCCAGAGGGGUUUUGGCCACGCGGCGGACAUAGCGCUGUGUGGGUAAC .((((.........((((((...))))))((((((((((.......)))))))))))))). ( -21.10, z-score = -1.96, R) >droMoj3.scaffold_6540 6085389 61 + 34148556 CUCACUCAACAAGUCCAGAAAUGUUUUUGAAACCCGCCUCACAUAGCGCUGCGUGGGCAGC (((((.((.((((..((....))..)))).....(((........))).)).))))).... ( -13.10, z-score = -0.17, R) >droGri2.scaffold_15074 6256856 61 + 7742996 CUCACUCAAUAAGUCCAGGGGCGUUUUUGCCACGCGACGCACAUAGCGCUGUGUGGGCAGC ............((((...((((....))))(((((.(((.....))).)))))))))... ( -20.20, z-score = -0.88, R) >triCas2.ChLG7 11845429 61 - 17478683 CUUACCUACUAAGUCCAUCGUAGUCCUUACAACAAUACGUUUAAAACGUGAUGUCGGUAAU .(((((...((((..(......)..))))..(((.(((((.....))))).))).))))). ( -11.30, z-score = -1.65, R) >consensus CUUACUCAAGAAGUCCAGAAUAGUCUUGGUCACGCGACGAACAUAACGCUGUGUGGGCAGC ............................(((((((((((.......)))))))).)))... ( -7.76 = -7.88 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:22 2011