| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,979,630 – 22,979,690 |
| Length | 60 |
| Max. P | 0.897981 |
| Location | 22,979,630 – 22,979,690 |
|---|---|
| Length | 60 |
| Sequences | 6 |
| Columns | 64 |
| Reading direction | forward |
| Mean pairwise identity | 85.50 |
| Shannon entropy | 0.27094 |
| G+C content | 0.43857 |
| Mean single sequence MFE | -15.65 |
| Consensus MFE | -13.84 |
| Energy contribution | -13.28 |
| Covariance contribution | -0.55 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.54 |
| Structure conservation index | 0.88 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.14 |
| SVM RNA-class probability | 0.897981 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22979630 60 + 27905053 GGAUUCCGGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCCUUCUUUUCU---GCUUUUCAUU- (((....(((..(((((((((.....)))))))..))..))).....)))---..........- ( -16.10, z-score = -1.68, R) >droSim1.chr3R 22817277 60 + 27517382 GGAUUCCGGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCCUUCUUUUCU---GCUUUUCAUU- (((....(((..(((((((((.....)))))))..))..))).....)))---..........- ( -16.10, z-score = -1.68, R) >droSec1.super_13 1734642 60 + 2104621 GGAUUCCGGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCCUUCUUUUCU---GCUUUUCAUU- (((....(((..(((((((((.....)))))))..))..))).....)))---..........- ( -16.10, z-score = -1.68, R) >droYak2.chr3R 5317155 61 - 28832112 GGAUUCCGGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCCUUCUUUUUUU--GCUAUUCAUU- .......(((..(((((((((.....)))))))..))..))).........--..........- ( -14.90, z-score = -1.43, R) >droEre2.scaffold_4820 5412308 60 - 10470090 GGGUUCCAGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCAUUCUAUUCU---GCUUUUCAUU- ((((.....(..(((((((((.....)))))))..))..).....)))).---..........- ( -12.80, z-score = -0.83, R) >droAna3.scaffold_12911 3897686 64 + 5364042 UGGUCUGGGGGCAGAGCUGUAAACGAUGCGGCUUAGUUUCCUUGUUCUACAUACAUAUUUAUAU ......((..((.((((((((.....)))))))).))..))....................... ( -17.90, z-score = -1.93, R) >consensus GGAUUCCGGGGGACAGCUGUAAACAAUGCGGCUUAGUUUCCUUCUUUUCU___GCUUUUCAUU_ (((....(((..(((((((((.....)))))))..))..)))....)))............... (-13.84 = -13.28 + -0.55)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:21 2011