| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,966,579 – 22,966,635 |
| Length | 56 |
| Max. P | 0.782555 |
| Location | 22,966,579 – 22,966,635 |
|---|---|
| Length | 56 |
| Sequences | 4 |
| Columns | 57 |
| Reading direction | forward |
| Mean pairwise identity | 74.93 |
| Shannon entropy | 0.41740 |
| G+C content | 0.66959 |
| Mean single sequence MFE | -24.38 |
| Consensus MFE | -18.71 |
| Energy contribution | -19.02 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.08 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.67 |
| SVM RNA-class probability | 0.782555 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22966579 56 + 27905053 ACGCCGCUCCGCUGCUGGCGUACCCGGCAGCGCAGCUACGCGGAUU-AGCCUAAGUC .(((.(((.(((((((((.....))))))))).)))...)))....-.......... ( -24.60, z-score = -1.39, R) >droSim1.chr3h_random 862076 54 + 1452968 GCGUCGCUGCGCUGCAGGCUAUGCCGGCAGCGCUGCUCCUGGACUU-AGGCUAAG-- .....((.(((((((.(((...))).))))))).)).((((....)-))).....-- ( -23.20, z-score = -0.31, R) >droYak2.chrX_random 1263066 56 - 1802292 GAGCCGCUCCGCUGCUGUCGUAUCCGGCAGCGCAGCUACGCGGCUU-AGCCUUCGAC (((((((...((((((((((....)))))..)))))...)))))))-.......... ( -25.70, z-score = -2.09, R) >droEre2.scaffold_4855 234991 55 - 242605 --GCCGCUCCGCUGCUGGCGUAGCUGGCAGCGCAGCUACGCGGUUUUAGGUUUAGCC --((.(((.((((((..((...))..)))))).)))...))((((........)))) ( -24.00, z-score = -0.55, R) >consensus GCGCCGCUCCGCUGCUGGCGUAGCCGGCAGCGCAGCUACGCGGCUU_AGCCUAAG_C ..((((((.(((((((((.....))))))))).))).....)))............. (-18.71 = -19.02 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:20 2011