| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,958,723 – 22,958,814 |
| Length | 91 |
| Max. P | 0.906356 |
| Location | 22,958,723 – 22,958,814 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 70.81 |
| Shannon entropy | 0.48759 |
| G+C content | 0.31045 |
| Mean single sequence MFE | -16.85 |
| Consensus MFE | -6.57 |
| Energy contribution | -6.92 |
| Covariance contribution | 0.35 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.44 |
| Structure conservation index | 0.39 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.19 |
| SVM RNA-class probability | 0.906356 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22958723 91 + 27905053 GAUUACUCACGUGAAUGCGCCACAAAGAUAUAAUUAAAUAACAA--------------------UUUUCAACUAUUUGCAUUCAUAUAGCCAUCUAAUGUGAAAUUCGCAC (((..((...(((((((((.......((...((((.......))--------------------)).)).......)))))))))..))..)))...((((.....)))). ( -12.24, z-score = -0.72, R) >droSim1.chr3R 22778527 73 + 27517382 GAUAACUCACGUGAAUGCGCAA-AAAGAUAUAAUUAAACAACAA--------------------UUAUACACUAUUUGCAUUCAUAAUUCGCAC----------------- ..........((((((..((((-(.((.(((((((.......))--------------------)))))..)).))))).......))))))..----------------- ( -11.60, z-score = -2.59, R) >droSec1.super_13 1721719 89 + 2104621 GAUUACUCACGUGAAUGCGCAA-AAAUUUAUAAUUAAACAACAA--------------------UUAUAAACUAUUUGCAUUCAUAUAGCCAUCUCACGUGAA-UUCGCAC ......((((((((((((((((-(..(((((((((.......))--------------------)))))))...)))))((....)).).))).)))))))).-....... ( -18.60, z-score = -3.83, R) >droYak2.chr3R 5303513 108 - 28832112 -GAUACUCACGUGAAUGCGCCA-AAAGAUAUAAUUAAAAAACAAAUGGGAAAAGUUAACAAUAAUUGUAAACUAUUUGCAUUCAUAUAGCAAUCUCACGUGAA-UUCGCUC -((...((((((((.(((....-.....((....)).......((((.(((.((((.(((.....))).)))).))).))))......)))...)))))))).-.)).... ( -21.00, z-score = -2.49, R) >droEre2.scaffold_4820 5398804 109 - 10470090 AAGUACUCACGCGAAUGCGGCA-AAAGAUAUAAUUAAAAAACAAAUACGAAAAGUUUAAAAUAAUUAUAAACUAUUUGCAUUCAUAUAGCAAUCUCACGUGAG-UUCGCAC ..(.(((((((.((.(((.(((-((((.((((((((..((((...........))))....))))))))..)).))))).........)))...)).))))))-).).... ( -20.80, z-score = -2.60, R) >consensus GAUUACUCACGUGAAUGCGCCA_AAAGAUAUAAUUAAAAAACAA____________________UUAUAAACUAUUUGCAUUCAUAUAGCAAUCUCACGUGAA_UUCGCAC ..........(((((((((.........................................................))))))))).............(((.....))).. ( -6.57 = -6.92 + 0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:19 2011