| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,764,695 – 8,764,793 |
| Length | 98 |
| Max. P | 0.567294 |
| Location | 8,764,695 – 8,764,793 |
|---|---|
| Length | 98 |
| Sequences | 5 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.86 |
| Shannon entropy | 0.31900 |
| G+C content | 0.49240 |
| Mean single sequence MFE | -20.48 |
| Consensus MFE | -17.36 |
| Energy contribution | -17.56 |
| Covariance contribution | 0.20 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.93 |
| Structure conservation index | 0.85 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.567294 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8764695 98 - 23011544 UUAAGUUCGCCACGGGAGACUUUAAUCUUUCGUCUCCUGGUUGGGACAGCCAGCUAACACACACACA----------GACUCACAGAUACCCACAGCUUUACACAGCU ...(((..(...((((((((...........))))))))(((((.....)))))...........).----------.))).............((((......)))) ( -21.00, z-score = -1.26, R) >droEre2.scaffold_4929 9351862 88 - 26641161 UUAAGUUCGCCACGGGAGACUUUAAUCUUUCGUCUCCUGGUUGGGACAGCCG------GCUCACACACA--------------CAGAUACCCACAGCUUUACUCAGCU ....((..(((..(((((((...........)))))))(((((...))))))------))..)).....--------------...........((((......)))) ( -22.50, z-score = -1.57, R) >droYak2.chr2L 11408042 108 - 22324452 UUAAGUUCGCCACGGGAGACUUUAAUCUUUCGUCUCCUGGUUGGGACAGCCGGCUCAUGCUCACACACAUAGAUACAGAUACCCAGAUACCCACAGCUUUACACAGCU ....(((((((..(((((((...........)))))))(((((...))))))))..(((........))).)).))..................((((......)))) ( -22.10, z-score = -0.14, R) >droSec1.super_3 4238106 108 - 7220098 UUAAGUUCGCCACGGGAGACUUUAAUCUUUCCUCUCUUGGUUGGGACAGCCAGCUAACACACACACACACACAUACCGACUCACAGAUACCCACAGCUUUACACAGCU ............(((((((.............))))((((((((.....))))))))..................)))................((((......)))) ( -16.52, z-score = -0.24, R) >droSim1.chr2L 8543453 88 - 22036055 UUAAGUUCGCCACGGGAGACUUUAAUCUUUCGUCUCCUGGUUGGGACAGCCAGCUAAC--------------------ACACACAGAUACCCACAGCUUUACACAGCU ....(((.....((((((((...........))))))))(((((.....))))).)))--------------------................((((......)))) ( -20.30, z-score = -1.42, R) >consensus UUAAGUUCGCCACGGGAGACUUUAAUCUUUCGUCUCCUGGUUGGGACAGCCAGCUAACACACACACACA________GACACACAGAUACCCACAGCUUUACACAGCU ............((((((((...........))))))))(((((.....)))))........................................((((......)))) (-17.36 = -17.56 + 0.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:55 2011