| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,896,819 – 22,896,995 |
| Length | 176 |
| Max. P | 0.654546 |
| Location | 22,896,819 – 22,896,995 |
|---|---|
| Length | 176 |
| Sequences | 6 |
| Columns | 176 |
| Reading direction | forward |
| Mean pairwise identity | 73.17 |
| Shannon entropy | 0.50140 |
| G+C content | 0.55002 |
| Mean single sequence MFE | -57.36 |
| Consensus MFE | -25.62 |
| Energy contribution | -24.83 |
| Covariance contribution | -0.79 |
| Combinations/Pair | 1.47 |
| Mean z-score | -1.65 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.654546 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22896819 176 + 27905053 CAAGUGUAGGGCUUCUCACAGUCGGUCAAGUUGACCUGUGAGAAGGUGCCGGCCAGCACUUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCAUCAAAGCUCGCGGAGCACAACUGCUCUGCUCUCGGCACCACCACCAAUGAAACUAUCCCCACGUUGGAGCCC ........((((((((((((...((((.....))))))))))))((((((((..(((((((.(((((......)))))))))((((((((((....))))))))))...))).((((((((....))))))))..))))))))....((((((............)))))).)))) ( -81.50, z-score = -4.78, R) >droAna3.scaffold_12911 3815953 159 + 5364042 CAUCUGUAGAGCUCUUAUGAGUCGUCUUGGCCUGCAUUUC------GUUUGACUAGCGAAUGUCUUGAUUGAAAGUAAAAGUAAAGCUAGUC-AAAGCUUAAGAUUAGAGCUUUGUGAGCACA-----CCUGCUCUCGGCGCCAGCUUCAACGCC-CUAUCCGCCCCGCCCU---- ......(((((((((..(((((.((....)).........------.((((((((((......(((...(....)...)))....)))))))-)))))))).....))))))))).(((((..-----..)))))..((((...((.........-......))..))))..---- ( -39.16, z-score = 0.45, R) >droEre2.scaffold_4820 5335220 163 - 10470090 CAAGCGUAGGGCUUCUCACAGUCGGCCAAGUUGACCUUU-------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGCUGCCGGAC-AAAGCUCGCCGGCAAAGCUCUCAGAUCGCA-----CUUGCUCUCGGCACCACCACCAAUGAAACUAUGCCCACGAUGGAGCCC ........(((((((.....((.(((...((((.((...-------....)).))))...((.((.((((((.((((..(((((((((((.(-.......)))))))..(.((...)).))))-----)))))).)))))).)).)).............))).))...))))))) ( -51.00, z-score = -0.31, R) >droYak2.chr3R 5238969 152 - 28832112 CAAGUGUAGGGCUUUUCACAUUCGGCCAAGUUGACCGUU-------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGC-AAAGCUCGGCAUCAAAGCUCUCGG----CA-----C-------CAACACCACCACCAAUGAAACUGUGCCCACGAUGGAGCCC ........((((((....((((.(((((.((((.(((..-------...))).))))...(((((.((((((.(((.....(((((((((((-...)))))))))))..))).))))----))-----.-------)))))................)).)))...)))))))))) ( -56.60, z-score = -2.02, R) >droSec1.super_13 1659116 167 + 2104621 CAAGUGUAGGGCUUCUCACAGUCGACCAAGUUGACCUUU-------UGCCGGCCAACAUCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCUUCAAAGCUCGCGGAGCACACCUGCUCUGCU--CCGCACCACCACCAAUGAAACUAUCCCCAGGUUGGAGCCC ........((((((((((..((((((...))))))((((-------(..((((.(((....)))))))..))))).....((((((((((((....)))))))..........((((((((.........))))--)))))))))......)))((((.......))))))))))) ( -60.60, z-score = -1.84, R) >droSim1.chr3R 22723172 155 + 27517382 CAAGUGUAGGGCUUCUCACAGUCGGCCAAGUUGACCUUU-------UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGCCAAAGCUCGGCUUCAAAGCUCGCGGAGCACACCUGCUCUGCU--CGGCACCACCACCAAUGAAACUAUCCCC------------ ........((((((.(((((((((((.(((.....))).-------.))))))((((....)))).)).)))))))....((((((((((((....((..((((....)))).))((((((....)))))))))--)))))))))..))...............------------ ( -55.30, z-score = -1.39, R) >consensus CAAGUGUAGGGCUUCUCACAGUCGGCCAAGUUGACCUUU_______UGCCGGCCAACACCUGUUGCUGCUGAAAGUAAAAGUGGUGCCGGGC_AAAGCUCGGCAUCAAAGCUCGCGGAGCACA_____CCUGCU__CGGCACCACCACCAAUGAAACUAUCCCCACGAUGGAGCCC ...((((.((((((......((((((...))))))..............((((((((....))))..))))..........(((.(((((((....))))))).)))))))))....((((.........))))....)))).................................. (-25.62 = -24.83 + -0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:16 2011