| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,872,639 – 22,872,732 |
| Length | 93 |
| Max. P | 0.677807 |
| Location | 22,872,639 – 22,872,732 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 73.78 |
| Shannon entropy | 0.50208 |
| G+C content | 0.45856 |
| Mean single sequence MFE | -23.38 |
| Consensus MFE | -10.63 |
| Energy contribution | -11.52 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.67 |
| Structure conservation index | 0.45 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.40 |
| SVM RNA-class probability | 0.677807 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22872639 93 - 27905053 UAUUGCGAUUUCACCUUGAAUCGCUCUCAGCGGUUGCAUAACCGCAAUAAAAAAAAACCAAAGCUGGCUUUUCUUCGGGCCACGUUGAGCCAG ....(((((((......))))))).((((((((((((......)))))................((((((......))))))))))))).... ( -27.80, z-score = -2.71, R) >droSim1.chr3R 22697993 90 - 27517382 UAUUGCGAUUUCACCUUGAAUCGCUCUCAGCGGUUGCAUAACCGAAGAAAAAAGCU---AAAAAAGGCUUUUCUUCGGGCCAAGUUGAGCCAG ....(((((((......))))))).((((((....((....(((((((((..((((---......)))))))))))))))...)))))).... ( -29.90, z-score = -3.09, R) >droSec1.super_13 1636173 86 - 2104621 UAUUGCGAUUUCACCUUGAAUCGCUCUCAGCGGUUGCAUAACCAAAGAAAAAAAAG-CUAAAAAAGGCUUUUCUUCGGGACAAGUUG------ ....(((((((......)))))))((((...((((....))))...(((..(((((-((......))))))).))))))).......------ ( -20.60, z-score = -1.67, R) >droYak2.chr3R 5214111 93 + 28832112 UAUUGCGAUUUCACCUUGAAUCGCUCUCAGUGGUUGCAUAACCAAAAAGAGCUACAAAAAAAAAGGCCAUUUCUUCGGGCCAAGUUGAGCCAG ....(((((((......)))))(((((...(((((....)))))...)))))............((((.........)))).......))... ( -22.60, z-score = -1.33, R) >droEre2.scaffold_4820 5310324 89 + 10470090 UAUUGCGAUUUCACCUUGAAUCGCUCUCAGUGGUUGCAUAACCGAAAAGAGCUAC----AAAAAGGCCAUUUCUUCGGGCCAAGUUGAGCCAG ....(((((((......)))))))(((...(((((....)))))...)))(((.(----((...((((.........))))...))))))... ( -23.80, z-score = -1.42, R) >droAna3.scaffold_12911 3790397 77 - 5364042 CAGUGCGAUUUCACCUUGAAUCUCACCCAUCGAUUGUGUAACCUGGACUCCCAGC-----------UCCCAGCUCCGGGCCAAGUCAG----- ..(((.(((((......))))).))).....((((.((...((((((......((-----------.....)))))))).))))))..----- ( -15.60, z-score = 0.18, R) >consensus UAUUGCGAUUUCACCUUGAAUCGCUCUCAGCGGUUGCAUAACCGAAAAAAAAAAC____AAAAAAGGCUUUUCUUCGGGCCAAGUUGAGCCAG ....(((((((......))))))).((((((((((....)))).............................(....).....)))))).... (-10.63 = -11.52 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:11 2011