| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,870,801 – 22,870,862 |
| Length | 61 |
| Max. P | 0.656756 |
| Location | 22,870,801 – 22,870,862 |
|---|---|
| Length | 61 |
| Sequences | 6 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 72.62 |
| Shannon entropy | 0.46608 |
| G+C content | 0.53899 |
| Mean single sequence MFE | -12.42 |
| Consensus MFE | -6.34 |
| Energy contribution | -6.09 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.56 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.656756 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22870801 61 - 27905053 ------CUCCUCCUCGGUUUUCCAUCUC---CAGUCUGCCCAGCA-----ACACUUCCUGCUUGUUAGGCAAACG ------.........((....)).....---..((.((((.((((-----(((.....)).))))).)))).)). ( -12.50, z-score = -2.52, R) >droSim1.chr3R 22696308 61 - 27517382 ------CUCCUCCUCGGUUUUCCAUCUC---CAGUCUGCCCAGCA-----ACACUUCCUGCUUGUUAGGCAAACG ------.........((....)).....---..((.((((.((((-----(((.....)).))))).)))).)). ( -12.50, z-score = -2.52, R) >droYak2.chr3R 5209219 61 + 28832112 ------CUCCUCAUCGGUUUUCCAUCUC---CAGUCUGCCCAGCA-----ACACUUCCUGCUUGUUAGGCAAACG ------.........((....)).....---..((.((((.((((-----(((.....)).))))).)))).)). ( -12.50, z-score = -2.57, R) >droEre2.scaffold_4820 5308471 61 + 10470090 ------CUCCACCUCGGGUUUCCAUCUC---CAGUCUGCCCAGCA-----ACACUUCCUGCUUGUUAGGCAAACG ------.........(((........))---).((.((((.((((-----(((.....)).))))).)))).)). ( -12.80, z-score = -1.47, R) >droAna3.scaffold_12911 3788990 75 - 5364042 UAUCUCUUCCAGCUGCAACUGCCAGUGCUGCCUGCCUGCCCAGCGCCCCUCCACUUCCUGCUUGUUAAGCAAACG ...........(((..(((.((.((((..(((((......))).)).....))))....))..))).)))..... ( -11.70, z-score = 0.70, R) >droWil1.scaffold_181089 4646156 60 + 12369635 ----------UAUUGGAGCUCCAUCUCCAGUCAGCCUGCCCAGCG-----CUACUUCCUGUUUGUUAAGCAAAUA ----------.(((((((......))))))).(((((....)).)-----))......((((((.....)))))) ( -12.50, z-score = -0.98, R) >consensus ______CUCCUCCUCGGUUUUCCAUCUC___CAGUCUGCCCAGCA_____ACACUUCCUGCUUGUUAGGCAAACG .................................(((((.(.((((.............)))).).)))))..... ( -6.34 = -6.09 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:10 2011