| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,868,393 – 22,868,485 |
| Length | 92 |
| Max. P | 0.574574 |
| Location | 22,868,393 – 22,868,485 |
|---|---|
| Length | 92 |
| Sequences | 5 |
| Columns | 92 |
| Reading direction | reverse |
| Mean pairwise identity | 89.82 |
| Shannon entropy | 0.17594 |
| G+C content | 0.36692 |
| Mean single sequence MFE | -22.26 |
| Consensus MFE | -18.36 |
| Energy contribution | -18.92 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.82 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.574574 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22868393 92 - 27905053 UUUUCAGCUUUUGGGGUGGAGACAGCAAAUGCAUAUUAAAUGAAAAUAUCUUUUUGUGUGGCAUAUUAAGAGGUUUUCCCCCAAAUCAGCGG ......((((((((((.((((((.((....))................((((..((((...))))..)))).)))))))))))))..))).. ( -26.40, z-score = -2.28, R) >droSim1.chr3R 22694003 92 - 27517382 UUUUUAGUUUUUGGGGUGGAGACAGCAAAUGCAUAUUAAAUGAAAAUACCUUUUUGUGUGGCAUAUUAAGAGGUUUUCCCCCAAAUCAGCGG ......((((((((((.((((((.((....))...(((((((...((((......))))..))).))))...)))))))))))))..))).. ( -23.20, z-score = -1.40, R) >droSec1.super_13 1632059 92 - 2104621 UUUUUAGUUUUUGGGGUGGAGACAGCAAAUGCAUAUUAAAUGAAAAUAUCUUUUUGUGUGUCAUAUUAAGAGGUUUUCCCCCAAAUCAGCGG ......((((((((((.((((((.((....))................((((..((((...))))..)))).)))))))))))))..))).. ( -24.00, z-score = -2.39, R) >droYak2.chr3R 5206916 85 + 28832112 ------GUUUUUGGGGUGGAUACAGCAAAUGCAUAUUAAAUGGAAAUAUCAUUUUGUCUGUCAUAUUAAGAGGUUUU-CCCCAAAUCAGCGG ------((((((((((..(((((((((((((.(((((.......))))))).)))).))))...........)))..-)))))))..))).. ( -18.30, z-score = -0.82, R) >droEre2.scaffold_4820 5306238 86 + 10470090 ------GUUUUUGGGGUGGAAACAGAAAAUGCAUAUUAAACUAAAAUAUCUUUUUGUCUGGCGUAUUAAGAGGUUUUCCCCCAAAUCAGCGG ------((((((((((.((((((..((.((((....((((............))))....)))).)).....)))))))))))))..))).. ( -19.40, z-score = -1.04, R) >consensus UUUU_AGUUUUUGGGGUGGAGACAGCAAAUGCAUAUUAAAUGAAAAUAUCUUUUUGUGUGGCAUAUUAAGAGGUUUUCCCCCAAAUCAGCGG ......((((((((((.((((((.((....))................((((..(((.....)))..)))).)))))))))))))..))).. (-18.36 = -18.92 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:10 2011