| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,864,539 – 22,864,655 |
| Length | 116 |
| Max. P | 0.869035 |
| Location | 22,864,539 – 22,864,655 |
|---|---|
| Length | 116 |
| Sequences | 8 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 76.21 |
| Shannon entropy | 0.46174 |
| G+C content | 0.40522 |
| Mean single sequence MFE | -27.52 |
| Consensus MFE | -13.14 |
| Energy contribution | -13.02 |
| Covariance contribution | -0.12 |
| Combinations/Pair | 1.20 |
| Mean z-score | -2.03 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.869035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22864539 116 - 27905053 UUUCGGUAUCUGUA-UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGCGAAAA-UCGAGA-CGGGAGAAAGUGCUUCACUUUUGCAAGCUUCUUUCGCACAUUUUCACAUUUCA ...((((.((((((-(.((.....)).))))))))))).............(.(((((-(.(.(.-((..((((..(((.........)))...))))..))).))))))).)...... ( -27.00, z-score = -2.11, R) >droSim1.chr3R 22690140 116 - 27517382 UUUCGGUAUCUGUA-UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGGGAAAA-UCGAGC-CGGGAGAAAGUGCUUCACUUUCGCAAGCUUCUUUCGCACAUUUUCACAUUUCA ...((((.((((((-(.((.....)).)))))))))))...............(((((-(.(.((-.(..((((..(((.........)))...))))..))).)))))))........ ( -25.70, z-score = -1.54, R) >droSec1.super_13 1628222 116 - 2104621 UUUCGGUAUCUGUA-UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGGGAAAA-UCGAGC-CGGGAGAAAGUGCUUCACUUUCGCAAGCUUCUUUCGCACAUUUUCACAUUUCU ...((((.((((((-(.((.....)).)))))))))))...............(((((-(.(.((-.(..((((..(((.........)))...))))..))).)))))))........ ( -25.70, z-score = -1.49, R) >droYak2.chr3R 5202976 117 + 28832112 UUUCGGUAUCUGUA-UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGGGAAAACUCGAGC-CGGGAGAAAGUGCUUCACUUUCGCAAGCUUCUUUCGCACAUUUUCACAUUUCA ..(((((.((((((-(.((.....)).)))))))...............(((((....)))))))-)))(((((.((((........(....)........)))).)))))........ ( -26.59, z-score = -1.75, R) >droEre2.scaffold_4820 5302422 116 + 10470090 UUUCGGUAUCUGUA-UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGGGAAAA-GCGAGC-CGAGAGAAAGUGCUUCACUUUCGCAAGCUUCUUUCGCACAUUUUCACAUUUCA ...((((.((((((-(.((.....)).))))))))))).............(..((..-(((((.-.(((.(((((((...))))))).....)))..)))))...))..)........ ( -27.30, z-score = -1.65, R) >droAna3.scaffold_12911 3780430 102 - 5364042 UUUAACUGUCUGCACUCUCUGGCUUACAAACGGAACCGUUGUUUGCUUUUUAGCUAAAAAAAAGUGGGAGAGAAAGUGCUUUACUUUCGCAUGCUUCUUUCG----------------- .......((.(((..(((((.((((...((((....))))....(((....))).......)))).)))))(((((((...)))))))))).))........----------------- ( -26.50, z-score = -1.69, R) >dp4.chr2 8468802 92 - 30794189 --------UCUGUG-UGUACGAA--ACAUGCAGAACCGUUGUUUGUUUUUCGGGCAAA----AG---GAGAGAAAGUGCUCUUUUUUUGCAUGCUUCUUUCG-GCAUUUCU-------- --------((((((-(((.....--))))))))).(((..(......)..)))(((((----((---(((((......))))))))))))(((((......)-))))....-------- ( -30.70, z-score = -3.02, R) >droPer1.super_0 2300657 92 - 11822988 --------UCUGUG-UGUACGAA--ACAUGCAGAACCGUUGUUUGUUUUUCGGGCAAA----AG---GAGAGAAAGUGCUCUUUUUUUGCAUGCUUCUUUCG-GCAUUUCU-------- --------((((((-(((.....--))))))))).(((..(......)..)))(((((----((---(((((......))))))))))))(((((......)-))))....-------- ( -30.70, z-score = -3.02, R) >consensus UUUCGGUAUCUGUA_UCUACAACUUAUAUGCAGAACCGUUGUUUACUUUUCGGGAAAA_UCGAGC_CGAGAGAAAGUGCUUCACUUUCGCAAGCUUCUUUCGCACAUUUUCACAUUUCA ........((((((..............)))))).(((..(......)..)))..............(((((((..(((.........)))...))))))).................. (-13.14 = -13.02 + -0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:09 2011