| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,819,137 – 22,819,248 |
| Length | 111 |
| Max. P | 0.700036 |
| Location | 22,819,137 – 22,819,248 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | reverse |
| Mean pairwise identity | 82.99 |
| Shannon entropy | 0.30544 |
| G+C content | 0.50690 |
| Mean single sequence MFE | -22.83 |
| Consensus MFE | -16.24 |
| Energy contribution | -17.16 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.66 |
| Structure conservation index | 0.71 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.700036 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22819137 111 - 27905053 CCAAUACCCAGUAACCAACCAGUAACCAGCUGAAUCGAGACGCUUGUCCACUUGCUGUCCACACACAGAAAUCAUUAAUUGUAAUUGCAGCCGACGCAUCUCGACGCAGCG ............................((((..((((((.((..(((.....(((((....(((..............)))....))))).))))).))))))..)))). ( -24.84, z-score = -2.27, R) >droSim1.chr3R 22650541 111 - 27517382 CCAAUACCCAGUAACCAACCAGUAACCAGCUGAAUCGAGACGCUUGUCCACUUGCUGUCCACACACAGAAAUUAUUAAUCGUAAUUGCAGCCGACGCAUCUCGACGCAGCG ............................((((..((((((.((..(((.....(((((...........((((((.....))))))))))).))))).))))))..)))). ( -25.00, z-score = -2.53, R) >droSec1.super_13 1591198 104 - 2104621 -------CCAGUAACCAACCAGUAACCAGCUGAAUCGAGACGCUUGUCCACUUGCUGUCCACACACAGAAAUCAUUAAUCGUAAUUGCAGCCGACGCAUCUCGACGCAGCG -------.....................((((..((((((.((..(((.....(((((....((................))....))))).))))).))))))..)))). ( -23.89, z-score = -1.65, R) >droYak2.chr3R 5165906 107 + 28832112 CCAAUACCCAAUGU----CCAGUAACCAGCUGAAUCGAGACACUUGUCCACUUGCUGUCCACACACAGCAAUCAUUAAUCGUAAUUGCAGCCGACGCAUCUCGGCGCAGCG ..............----..........((((...((((((....)))...(((((((......))))))).......)))........(((((......))))).)))). ( -25.40, z-score = -1.76, R) >droEre2.scaffold_4820 5250585 94 + 10470090 -------------C----CCAGUAACCAGCUGAAUCGAGACACUUGUCCACUUGCUGUCCACACACAGAAAUCAUUAAUCGUAAUUGCAGCCGACGCAUCUCGACGCAGCG -------------.----..........((((..((((((....((((.....(((((....((................))....))))).))))..))))))..)))). ( -21.39, z-score = -1.58, R) >droAna3.scaffold_12911 3741436 93 - 5364042 -----------------ACCGGCAACGCACCGAAUCGAGACACUUGUCCACUUGCUGUCCACACACAAAAAACAAUAAUCGUAAUUGCAGCCGACGCAGUGCCCCA-AGAG -----------------...(....)((((.(..(((.(((....))).....(((((....((................))....))))))))..).))))....-.... ( -16.49, z-score = -0.19, R) >consensus _______CCAGUAA___ACCAGUAACCAGCUGAAUCGAGACACUUGUCCACUUGCUGUCCACACACAGAAAUCAUUAAUCGUAAUUGCAGCCGACGCAUCUCGACGCAGCG ............................((((..((((((....((((.....(((((....((................))....))))).))))..))))))..)))). (-16.24 = -17.16 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:06 2011