| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,814,940 – 22,815,060 |
| Length | 120 |
| Max. P | 0.524357 |
| Location | 22,814,940 – 22,815,060 |
|---|---|
| Length | 120 |
| Sequences | 12 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 80.31 |
| Shannon entropy | 0.41942 |
| G+C content | 0.50898 |
| Mean single sequence MFE | -41.33 |
| Consensus MFE | -20.73 |
| Energy contribution | -20.12 |
| Covariance contribution | -0.60 |
| Combinations/Pair | 1.39 |
| Mean z-score | -1.70 |
| Structure conservation index | 0.50 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.06 |
| SVM RNA-class probability | 0.524357 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22814940 120 + 27905053 ACCCACCUAUAGUACUCGUAGUCGUAGCGCAGGUAUGUGGAGAACGGCUGCAGUUCCAAGCCAUCCGGGCAGAUCGGAUUGCCAUGGAGGCUCAAAUACUGCAGAUUGGGAAAGAACUUU .((((.(((((...(((((.......))).))...))))).......(((((((....((((.(((((((((......))))).)))))))).....)))))))..)))).......... ( -40.50, z-score = -1.45, R) >droSim1.chr3R 22646404 120 + 27517382 ACCCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAGUGGAGAACGGUUGCAGUUCCAAGCCAUCCGGGCAGAUCGGAUUGCCAUGGAGGCUCAAAUACUGCAGGUUGGGAAAGAACUUU .(((((((((((((...(((..(((..(((......)))....)))..))).......((((.(((((((((......))))).))))))))....))))))))).)))).......... ( -45.70, z-score = -2.75, R) >droSec1.super_13 1587096 120 + 2104621 ACUCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAAGUGGAGAACGGCUGCAGUUCCAAGCCAUCCGGGCAGAUCGGAUUGCCAUGGAGGCUCAAAUACUGCAGGUUGGGAAAGAACUUU .(((((((((((((...((((((((..(((......)))....)))))))).......((((.(((((((((......))))).))))))))....))))))))).)))).......... ( -46.70, z-score = -2.89, R) >droYak2.chr3R 5161639 120 - 28832112 ACCCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAACUGGAGAAUGGCUGCAGUUCCAAGCCAUCUGGACAGAUCGGAUUGCCAUGGAGGCUCAAAUACUGCAGGUUGGGAAAGAACUUU .(((((((((((((...((((((((..(.(((....))))...))))))))(((((((.((.((((((.....)))))).))..)))).)))....))))))))).)))).......... ( -45.20, z-score = -2.64, R) >droEre2.scaffold_4820 5246327 120 - 10470090 ACCCACCUGUAGUACUCGUAGUCGUAGCGCAGGUAACUGGAGAAUGGCUGCAGUUCCAAGCCAUCCGGGCAGAUCGGAUUGCCAUGGAGGCUCAAAUACUGCAGAUUGGGAAAGAACUUU .((((.((((((((...((((((((..(.(((....))))...)))))))).......((((.(((((((((......))))).))))))))....))))))))..)))).......... ( -45.50, z-score = -2.66, R) >droAna3.scaffold_12911 3737217 120 + 5364042 ACUCACCUGUAAUAUUGGUAGUCAUAGCGAAGGUAACCGGAGAAGGGCUGCAGUUCUAGUCCAUCGGGACAGAUUGGGUUGCCGUGGAGACUCAAAUACUGCAGAUUGGGAAAUAGCCGC .((((.(((((.((((.(.((((...((...(((((((.((..(((((....))))).((((....))))...)).)))))))))...))))).)))).)))))..)))).......... ( -35.80, z-score = -0.61, R) >dp4.chr2 8422038 119 + 30794189 -CCUACCUGUAGUACUCGUAGUCGUAGCGCAAAUACCCAGAGAAGGGCUGAAGCUCGAGGCCAUCUGGACAAAUGGGAUUGCCGUGGAGGCUCAGGUACUGCAGGUUGGGAAAUAGUCGU -((((((((((((((..(.((((...((((((...((((.....((((....))))..(.((....)).)...)))).))).)))...)))))..)))))))))).)))).......... ( -44.80, z-score = -2.07, R) >droPer1.super_0 2255704 119 + 11822988 -CCUACCUGUAGUACUCGUAGUCGUAGCGCAAGUACCCAGAGAAGGGCUGAAGCUCGAGGCCAUCUGGACAAAUGGGAUUGCCGUGGAGGCUCAGGUACUGCAGGUUGGGAAAUAGUCGU -((((((((((((((..(.((((...((((((...((((.....((((....))))..(.((....)).)...)))).))).)))...)))))..)))))))))).)))).......... ( -45.90, z-score = -2.11, R) >droWil1.scaffold_181089 4584064 120 - 12369635 UUUUACCUGUAGUAUGCAUAGUCGUAUUGCAAAUAGCUGGAAAAUGGCUGCAAUUCCAGGCCAUCGGGGCAAAUGGGAUUGCCAUGUAGACUCAAAUACUGUAGAUUUGGAAAGAGACGU ......(((((((((....((((....((((...(((((.....)))))(((((((((.(((.....)))...)))))))))..))))))))...)))))))))................ ( -32.90, z-score = -1.01, R) >droVir3.scaffold_13047 9434200 120 - 19223366 GCCCACCUGUAGUAUGUAUAAUCGUAAUCCAAGUAGCUGGAGAAAGGCUGCAAAUGCAGGCCGUCGGGGCAAAUGGGAUUGCCAUGUAGGCUGAGGUACUGCAGGUUGGGAAAGAGCCGC .((((((((((((((.(........(((((..((((((.......)))))).....((.(((.....)))...)))))))(((.....)))..).)))))))))).)))).......... ( -44.80, z-score = -1.88, R) >droMoj3.scaffold_6540 9590408 120 + 34148556 GCCCACCUGUAGUAUGCGUAAUCGUAGUCCAAGUAGCUGGAGAAGGGCUGCAAGUGGAGGCCGUCCGGGCAAAUGGGAUUGCCAUGGAGGCUUAGGUACUGUAUGUUGGGAAAGAGUCGC .(((((.(((((((((((....)))..((((.((((((.......))))))...))))((((.(((((((((......))))).))))))))...)))))))).).)))).......... ( -40.30, z-score = -0.59, R) >droGri2.scaffold_14906 11520610 118 - 14172833 --AUACCUGUAAUAUUUGUAGUCGUAUUGUAAGUAACUGGAAAAGGGUUGCAAAUUGAGGCCAUCCGGGCAAAUGGGAUUUCCGUGCAGGCUUAGAUAUUGUAGAUUGGGAAAGUGCCGU --....((((((((((((.((((.............(((((....(((..(.....)..))).)))))(((....((....)).))).))))))))))))))))....((......)).. ( -27.80, z-score = 0.22, R) >consensus ACCCACCUGUAGUACUCGUAGUCGUAGCGCAAGUAACUGGAGAAGGGCUGCAGUUCCAGGCCAUCCGGGCAAAUGGGAUUGCCAUGGAGGCUCAAAUACUGCAGGUUGGGAAAGAGCCGU .((((.((((((((.....((((...............(((....((((.........)))).)))((.(((......))))).....))))....))))))))..)))).......... (-20.73 = -20.12 + -0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:05 2011