| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,807,675 – 22,807,733 |
| Length | 58 |
| Max. P | 0.860000 |
| Location | 22,807,675 – 22,807,733 |
|---|---|
| Length | 58 |
| Sequences | 6 |
| Columns | 70 |
| Reading direction | reverse |
| Mean pairwise identity | 65.26 |
| Shannon entropy | 0.60230 |
| G+C content | 0.38117 |
| Mean single sequence MFE | -15.47 |
| Consensus MFE | -5.40 |
| Energy contribution | -6.18 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.46 |
| Mean z-score | -2.01 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.95 |
| SVM RNA-class probability | 0.860000 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22807675 58 - 27905053 AUGGCUUUAAUUGACUUGAACA----UUUGCUGUCAA--UAGCAGCAGA---CAGUUCACCUCAAAU--- ..........((((..(((((.----((((((((...--..))))))))---..)))))..))))..--- ( -17.20, z-score = -3.10, R) >droEre2.scaffold_4820 5239080 58 + 10470090 AUGGCUUUAAUUGACUUGAACA----UUUGCUGUCAA--UGGCAGCAGA---CAGUUCACCUCAAAU--- ..........((((..(((((.----((((((((...--..))))))))---..)))))..))))..--- ( -18.70, z-score = -3.25, R) >droYak2.chr3R 5154267 58 + 28832112 AUGGCUUUAAUUGACUUGAGCG----UUUGCUGUCAA--UGGCAGCAGA---CAGUUCACCUCAAAU--- ..........((((..((((((----((((((((...--..))))))))---).)))))..))))..--- ( -22.40, z-score = -3.83, R) >droAna3.scaffold_12911 3729298 58 - 5364042 AUGCUUUUAAUUGACUCAAACA----UUUUCUGUCAA--UAGAUGGAGA---CAGUUCACCUCAAAC--- ..........((((....(((.----.((((((((..--..))))))))---..)))....))))..--- ( -8.90, z-score = -0.58, R) >droMoj3.scaffold_6540 9579654 68 - 34148556 GUUGCUAUAAUUGAUCAAAAAAUAUUUUUGCUGUCAACUUGGUGGCCAAU--GAAGGCGCCUCCUAAAAA ((..(((...((((((((((.....)))))..)))))..)))..))....--..(((.....)))..... ( -11.10, z-score = -0.07, R) >droGri2.scaffold_14906 11511494 68 + 14172833 GUUGCCCUAAUUGAU--AAAAAUAUUUUUGCUGUCAACACGAUAUCUAAUUGGGGGCCAGCUUCUGUAAA ((((((((..(((((--(.(((....)))..))))))..((((.....)))))))).))))......... ( -14.50, z-score = -1.22, R) >consensus AUGGCUUUAAUUGACUUAAACA____UUUGCUGUCAA__UGGCAGCAGA___CAGUUCACCUCAAAU___ ..........((((............(((((((((.....)))))))))............))))..... ( -5.40 = -6.18 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:47:04 2011