| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,750,158 – 22,750,266 |
| Length | 108 |
| Max. P | 0.741208 |
| Location | 22,750,158 – 22,750,266 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 116 |
| Reading direction | forward |
| Mean pairwise identity | 79.76 |
| Shannon entropy | 0.37173 |
| G+C content | 0.47564 |
| Mean single sequence MFE | -33.27 |
| Consensus MFE | -20.05 |
| Energy contribution | -19.80 |
| Covariance contribution | -0.25 |
| Combinations/Pair | 1.27 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.56 |
| SVM RNA-class probability | 0.741208 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22750158 108 + 27905053 -AGCGAAUGUCAAGGCG------AAUGUCCCACAGAUGGGGUCAAGUCAAAUGUCUUGAUUCCACGCCCCAGAGAUUGCAUUUAUGCGAUGUGAUUAACUGACUUUGACCCCCGA- -..((...(((((((((------..((.....))..((((((((((.(....).)))))))))))))).(((.(((..((((.....))))..)))..)))...)))))...)).- ( -32.50, z-score = -2.09, R) >droSim1.chr3R 22580717 107 + 27517382 --GCGAAUGUCAAGGCG------AAUUUCCCACUGAAUGGGUCAAGUCAAAGGUCUUGACUCCACGCCCCAGAGAUUGCAUUUAUGCGCUGUGAUUUACUGACUUUGACCCCCGA- --.((...(((((((((------...(((.....)))(((((((((.(....).)))))).))))))).(((((((..((.........))..)))).)))...)))))...)).- ( -29.60, z-score = -1.45, R) >droSec1.super_13 1522967 108 + 2104621 -AGCGAAUGUCAAGGCG------AAUUUCCCACUGAUGGGGUCAAGUCAAAGGUCUUGACUCCACGCCCCAGAGAUUGCAUUUAUGCGCUGUGAUUUACUGACUUUGACCCCCGA- -..((...(((((((((------....((.....))((((((((((.(....).)))))))))))))).(((((((..((.........))..)))).)))...)))))...)).- ( -32.80, z-score = -1.71, R) >droYak2.chr3R 5095182 115 - 28832112 -AGCGAAUGUCAAGGCAGUGAUCAGUGGAUCAGUGAUGGGGUCAAGUCAAAGGUUUUGAUUCCACGCCUCAGUGAUUGCAAUUAUGCGAUGUGAUUUACUGACUUUGACCCCUCAG -...((..(((((((......((((((((((((((.((((((((((........))))))))))))).......((((((....)))))).))))))))))))))))))...)).. ( -38.10, z-score = -2.14, R) >droEre2.scaffold_4820 5180618 107 - 10470090 -AUUGAAUGUCAAGGCA------AAUUUAUCGGUGAUGGGUUCAAGUCAAAGGUCUUGAUUCCACGCCCCGUUGAUUGCAAUUAUGCGAUGUGAUUUACUGCCUUUGACCCCAA-- -.......(((((((((------.....(((((((.(((..(((((.(....).)))))..)))))))......((((((....))))))..)))....)))).))))).....-- ( -33.10, z-score = -2.52, R) >droAna3.scaffold_13340 7118401 109 - 23697760 AUGCGAAUGUCAAGGCA------AAUGUCUAUUUGGCGGGGUCCAGUCAGGGGUUGGGACUCCACGCCCCAACGAUUGCAUUUAUUUGAUGUGAUUUACUCUUCAUUGCCCCAAG- ........((((((((.------...))))...))))(((((......((((((((((.(.....).))))))(((..((((.....))))..)))..)))).....)))))...- ( -33.50, z-score = -0.83, R) >consensus _AGCGAAUGUCAAGGCA______AAUGUCCCACUGAUGGGGUCAAGUCAAAGGUCUUGACUCCACGCCCCAGAGAUUGCAUUUAUGCGAUGUGAUUUACUGACUUUGACCCCCGA_ ........(((((((......................(((((((((.(....).)))))))))..........(((..((.........))..)))......)))))))....... (-20.05 = -19.80 + -0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:59 2011