| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,727,388 – 22,727,495 |
| Length | 107 |
| Max. P | 0.602730 |
| Location | 22,727,388 – 22,727,495 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 68.11 |
| Shannon entropy | 0.61513 |
| G+C content | 0.32410 |
| Mean single sequence MFE | -18.21 |
| Consensus MFE | -9.80 |
| Energy contribution | -10.50 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.38 |
| Mean z-score | -0.64 |
| Structure conservation index | 0.54 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.23 |
| SVM RNA-class probability | 0.602730 |
| Prediction | RNA |
| WARNING | Out of training range. z-scores are NOT reliable. |
Download alignment: ClustalW | MAF
>dm3.chr3R 22727388 107 + 27905053 CCGCUUAAACUCUGGCAUUUAAUAUUUCGAAGUU----UAGAAAACAUAAUUGAAUAUCGUGUCCAAAUUGGACUUUGUUUGAUUUUCAGACUGCAGUCUUUGCACUGCCA ..(((........)))..............((((----(.((((.....((..((((....((((.....))))..))))..)))))))))))(((((......))))).. ( -21.30, z-score = -0.94, R) >droEre2.scaffold_4820 5157559 102 - 10470090 ACGGUUAAACUCUGGCAUU-----AUUCGAAAUA----CAGAAAACUUAAUUGAAUAUCGCGUCCGAAUCGGACUUUGUUUGAUUUUCAAAUUGCAGUCUUUGCACAGCCA ..((((((((....((..(-----((((((....----............)))))))..))(((((...)))))...))))...........(((((...))))).)))). ( -19.09, z-score = -0.26, R) >droYak2.chr3R 5071508 111 - 28832112 ACAGUUAAACUUUGGCAUUUCAUUAUUGGAAAUAUGUACACAAAACUUAAUUGAAUAUCGUGUCCGAAUCGGACUUGGUUUGCUUUUCAAAUUGCAGUCUUUGCACUGCCA .(((((((..((((((((((((....))))...))))...))))..)))))))...((((.(((((...))))).))))..............(((((......))))).. ( -21.30, z-score = -0.44, R) >droSec1.super_13 1500601 102 + 2104621 CCGCUUAAACUUUGGCAUUUAUUUUUUUGAAGUU----UAGAAAACAUAAUUGAACAU-----CCAAAGUGGACUUUGUUUGAUUUUUAAACUGCAGUCUUUGCACUGCCA ..(((........)))..............((((----((((((.((....))..((.-----.(((((....)))))..)).))))))))))(((((......))))).. ( -21.00, z-score = -1.38, R) >droSim1.chr3R 22558179 107 + 27517382 CAUCUUAAACUUUGGCAUUUCUUUUUUUUAAGUU----UAAAAAACAUAAUUAAAUAUCUUGUUCAUUUUGGACUUUGUUUGAUUUUCAGACUGCAGUCUUUGCACUGCCA ............(((((............(((((----(((((((((..((.....))..))))..)))))))))).(((((.....)))))(((((...))))).))))) ( -18.80, z-score = -1.59, R) >droWil1.scaffold_181096 9593420 107 + 12416693 UUCUUUUUUUUUUUGCGUUUAACCUUUCCAUAAA-AUCUAUUUUUUUCAAGCAAGAAACAAGCUCAAAC---ACUUUGCAUAAUAUUCCAUUUUUUGUUUUUGAUUCGCAA ........((((((((..................-...............))))))))...(((((((.---((......................)).)))))...)).. ( -7.76, z-score = 0.76, R) >consensus CCGCUUAAACUUUGGCAUUUAAUUUUUCGAAAUA____UAGAAAACAUAAUUGAAUAUCGUGUCCAAAUUGGACUUUGUUUGAUUUUCAAACUGCAGUCUUUGCACUGCCA ............(((((...............................(((((((((....(((((...)))))..))))))))).......(((((...))))).))))) ( -9.80 = -10.50 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:53 2011