| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,724,677 – 22,724,730 |
| Length | 53 |
| Max. P | 0.874495 |
| Location | 22,724,677 – 22,724,730 |
|---|---|
| Length | 53 |
| Sequences | 5 |
| Columns | 53 |
| Reading direction | reverse |
| Mean pairwise identity | 78.88 |
| Shannon entropy | 0.34998 |
| G+C content | 0.33592 |
| Mean single sequence MFE | -7.56 |
| Consensus MFE | -5.94 |
| Energy contribution | -6.26 |
| Covariance contribution | 0.32 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.50 |
| Structure conservation index | 0.79 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.02 |
| SVM RNA-class probability | 0.874495 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22724677 53 - 27905053 UCCAAAUUAUUUCUUUGGGUGUGAUCAUCUUAUUCGUCUUCCCAUUUAUAAGC ......((((.....((((...(((.(......).)))..))))...)))).. ( -6.20, z-score = -0.82, R) >droSim1.chr3R 22555497 50 - 27517382 UUCCAAUUUCCU--UUGGGUGUGAUCAUCUUA-UCGUCACCUCAAUUAUUAAC ............--(((((((((((......)-))).)))).)))........ ( -8.60, z-score = -1.94, R) >droSec1.super_13 1497849 50 - 2104621 UUCAAAUUUCCU--UUGGGUGUGAUCAUCUUA-UCGUCACCUCAAUUAUUAAC ............--(((((((((((......)-))).)))).)))........ ( -8.60, z-score = -2.10, R) >droYak2.chr3R 5068750 50 + 28832112 -UUAAAAUAUUUC-UUGUGUGUGAUCACGAUA-UCGUCACCUCAAUUAUAAGC -...........(-(((((..(((..(((...-.)))....)))..)))))). ( -5.90, z-score = -0.56, R) >droEre2.scaffold_4820 5154797 50 + 10470090 -UUCAAAUUUUUC-UUGGGUGUGAUCAUAAUA-UCGUCACCUCAAUUAUAAGC -............-(((((((((((......)-))).)))).)))........ ( -8.50, z-score = -2.05, R) >consensus UUCAAAUUUUUUC_UUGGGUGUGAUCAUCUUA_UCGUCACCUCAAUUAUAAGC ..............(((((.(((((..........))))))))))........ ( -5.94 = -6.26 + 0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:53 2011