| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,709,716 – 22,709,821 |
| Length | 105 |
| Max. P | 0.707244 |
| Location | 22,709,716 – 22,709,821 |
|---|---|
| Length | 105 |
| Sequences | 12 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 70.64 |
| Shannon entropy | 0.62747 |
| G+C content | 0.59886 |
| Mean single sequence MFE | -36.57 |
| Consensus MFE | -18.77 |
| Energy contribution | -19.17 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.29 |
| Mean z-score | -0.83 |
| Structure conservation index | 0.51 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.707244 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22709716 105 - 27905053 GACGAGUGUGUUGCCAUUGUAGAGUCCCGCGUUGCGGUACUCUUUCGCGAAGGGCGUGGCAGCCUGUGCCGCCCCCACGAUUAGCACUUGGACGAGCCAGAAGAU------------ ..(((((((.((((......(((((.((((...)))).)))))...)))).(((.((((((.....)))))).))).......)))))))...............------------ ( -38.40, z-score = -1.27, R) >droSim1.chr3R 22540702 105 - 27517382 GACGAGGGUGUUGCCAUUGAAGAGUCCCGCGUUGCGGUACUCCUUCGCGAAGGGCGUGGCAGCCUGUGCCGCCCCCACGACUAGCACUUGGACGAGCCAGAAGAU------------ ..((.((((((((.....(((((((.((((...)))).))).)))).((..(((.((((((.....)))))))))..))..))))))))...))...........------------ ( -36.30, z-score = 0.11, R) >droSec1.super_13 1483025 105 - 2104621 GACGAGUGUGUUGCCAUUGAAGAGUCCCGCGUUGCGGUACUCCUUCGCGAAGGGCGUGGCAGCCUGUGCCGCCCCCACGACUAGCACUUGGACGAGCCAGAAGAU------------ ..(((((((((((.....(((((((.((((...)))).))).)))).....(((.((((((.....)))))).))).))))..)))))))...............------------ ( -38.90, z-score = -1.26, R) >droYak2.chr3R 5052940 108 + 28832112 GACGAGGGUGUUGCCAUUGAAGAGUCCCGCGUCGCGGUACUCCUUUGCGAAGGGCGUGGCAGCCUGUGCCGCCCCCACGAAUAGCACUAUGGCCAGCCAGAAGAAGAU--------- ......(((...(((((.(..((((.((((...)))).))))((...((..(((.((((((.....)))))))))..))...))..).)))))..)))..........--------- ( -37.80, z-score = -0.56, R) >droEre2.scaffold_4820 5139118 105 + 10470090 GACGAGGGUAUUGCCAUUGAAGAGUCCCGCGUCGCGGUACUCCUUCGCGAAGGGCGUGGCAGCCUGUGCCGCCCCCACGAAUAGCACUAUGGCCAGCCAGAAGAU------------ ......(((...(((((.(((((((.((((...)))).))).)))).((..(((.((((((.....)))))))))..)).........)))))..))).......------------ ( -37.70, z-score = -0.66, R) >droAna3.scaffold_13340 7078962 104 + 23697760 GACCAGGGUGUUGCCCUUGAAGACGCCCGCACUGCGGUACUCCUUGGCGUAGGGCGUGGCCGACUGCGCCGCCCUCGAGGAUAUGGCCAAAAGGAGCCAGUAGA------------- .....(((((((.........)))))))...((((((..(((((((((....((((..(....)..))))..((....)).....))))..))))))).)))).------------- ( -40.10, z-score = -0.03, R) >dp4.chr2 26039467 102 + 30794189 GACGAGGGUGUUGCCCUUGAAGAGACCCGCGCUGCGGUACUCCUUAGCAAAGGGUGUCGCCGCCUGGGCCGCCCCCGCG---ACCAUUAAUACCAGCCACACAAU------------ ..((.(((.((.((((..(..((.((((..((((.((....)).))))...)))).))....)..)))).)).))).))---.......................------------ ( -35.30, z-score = -0.77, R) >droPer1.super_19 1417670 102 + 1869541 GACGAGGGUGUUGCCCUUGAAGAGACCCGCGCUGCGGUACUCCUUAGCAAAGGGUGUCGCCGCCUGGGCCGCCCCCGCG---ACCAUUAAUACCAGCCACACAAU------------ ..((.(((.((.((((..(..((.((((..((((.((....)).))))...)))).))....)..)))).)).))).))---.......................------------ ( -35.30, z-score = -0.77, R) >droWil1.scaffold_181108 480229 105 - 4707319 CACUAGAGUAUUACCCUUGAAGAGACCUGCACUUCGAUACUCUUUUGCAAAGGGUGUGGCACCUUGAGCCGCCCCCAAGAACAUAAAUACCAUCAAA--CUAAAGUU---------- ((..((((((((......((((.(.....).))))))))))))..))....(((.(((((.......))))).))).....................--........---------- ( -23.40, z-score = -1.62, R) >droMoj3.scaffold_6540 11703897 111 - 34148556 GAUCAGCGUGUUGCCUUUGAACAGGCCCGCGCUUCGGUAUUCCUUGGCAAAGGGCGUGGCACCCAGCGCCGCCCCCAGCAGCAUCAACAGCAG------GCAAAGCAGGCGACACAC .......(((((((((........(((.(((((..((....))..)))...(((.(((((.......))))).))).............)).)------)).....))))))))).. ( -42.82, z-score = -1.08, R) >droVir3.scaffold_12855 2493215 117 - 10161210 GAUUAGCGUGUUGCCUUUGAACAGGCCCGCGCUCCGAUAUUCCUUGGCAAAGGGCGUGGCGCCCAGUGCCGCCCCCAGCAACAUGAACAACAACAAGACGCACAUUUGCCAGCAAAC ....((((((..((((......)))).))))))..........(((((((((((.(((((((...))))))).))).((..(.((........)).)..))...))))))))..... ( -40.30, z-score = -1.93, R) >droGri2.scaffold_14624 1788454 111 + 4233967 GAUGAGAGUGUUGCCCUUGAAGAGACCCGCACUGCGGUAUUCCUUGGCAAAGGGCGUGGCACCCAAAGCCGCCCCCAAGAGCAUUGAAAGGAU------UCCGAUUUGUCGGCAGAU ((..(((((((.(..(((...)))..).))))).(((...(((((.((...(((.(((((.......))))).)))....)).....))))).------.))).))..))....... ( -32.50, z-score = -0.06, R) >consensus GACGAGGGUGUUGCCAUUGAAGAGUCCCGCGCUGCGGUACUCCUUCGCAAAGGGCGUGGCAGCCUGUGCCGCCCCCACGAAUAGCACUAGGACCAGCCAGAAGAU____________ ..........((((....((.(((..(((.....)))..))).)).)))).(((.((((((.....)))))).)))......................................... (-18.77 = -19.17 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:47 2011