| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,699,904 – 22,699,995 |
| Length | 91 |
| Max. P | 0.591023 |
| Location | 22,699,904 – 22,699,995 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 115 |
| Reading direction | forward |
| Mean pairwise identity | 63.99 |
| Shannon entropy | 0.58015 |
| G+C content | 0.64878 |
| Mean single sequence MFE | -45.32 |
| Consensus MFE | -19.82 |
| Energy contribution | -20.18 |
| Covariance contribution | 0.36 |
| Combinations/Pair | 1.57 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.44 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.591023 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22699904 91 + 27905053 ------------------UUGUGGUGUUGGCUG---UUGCGAAGACUGCUGC--UGGUGGGA-UGGAGGAGCUGCACCCGGCACUGGGGGCGGCAUGUUCCAGUUACCUGGAGCC ------------------....(((.((.((..---..)).)).)))(((.(--.(((((..-(((((.((((((.((((....)))).))))).).))))).))))).).))). ( -38.90, z-score = -1.40, R) >droSim1.chr3R 22530968 94 + 27517382 ------------------UUGUGGUGUUGGCUGCUGUUGCUGAGACUGCUGC--UGGUGGGA-UGGAGGAGCUGCACCCGGCACUGGGGGCGGCAUGUUCCAGUUACCUGGAGCC ------------------....(((.(..((.......))..).)))(((.(--.(((((..-(((((.((((((.((((....)))).))))).).))))).))))).).))). ( -40.20, z-score = -1.11, R) >droSec1.super_13 1473268 94 + 2104621 ------------------UUGUGGUGUUGGCUGCUGUUGCUGAGACUGCUGC--UGGUGGGA-UGGAGGAGCUGCACCCGGCACUGGGGGCGGCAUGUUCCAGUUACCUGGAGCC ------------------....(((.(..((.......))..).)))(((.(--.(((((..-(((((.((((((.((((....)))).))))).).))))).))))).).))). ( -40.20, z-score = -1.11, R) >dp4.chr2 26027547 96 - 30794189 -------------------GGAGGCGGUUGCUGGUGUGGCGGUGGACCCUGCGGCAGCGGUGCUCCAGGUACGGGUGGCGGGGCAUUGGGCGGCAUGUUCCAGUUACCCGGCGCC -------------------((((.((.(.((((.((..(.((....)))..)).))))).)))))).(((.(((((((((((((((........))))))).))))))))..))) ( -45.90, z-score = -0.24, R) >droGri2.scaffold_15074 1353959 115 - 7742996 CACCGGCUGCUGCUGCUGUGGCGGUGGCGGCUGAUGGGGCGGUGGUCCCUGUGUUAGCGGCAUUGCACCGGGUAUUGGUGGUGCCGCCGCUGGCAUAUUCCAAUUACCAACCGCA ((.(((((((..((((....))))..))))))).))..((((((((...((((((((((((...((((((........)))))).))))))))))))........))).))))). ( -61.40, z-score = -2.40, R) >consensus __________________UUGUGGUGUUGGCUGCUGUUGCGGAGACUGCUGC__UGGUGGGA_UGGAGGAGCUGCACCCGGCACUGGGGGCGGCAUGUUCCAGUUACCUGGAGCC ......................(((.(((((.......))))).))).((((....))))..........(((((.((((....)))).)))))..(((((((....))))))). (-19.82 = -20.18 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:47 2011