| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,686,471 – 22,686,525 |
| Length | 54 |
| Max. P | 0.868828 |
| Location | 22,686,471 – 22,686,525 |
|---|---|
| Length | 54 |
| Sequences | 5 |
| Columns | 61 |
| Reading direction | reverse |
| Mean pairwise identity | 63.91 |
| Shannon entropy | 0.61154 |
| G+C content | 0.40926 |
| Mean single sequence MFE | -11.24 |
| Consensus MFE | -5.56 |
| Energy contribution | -5.40 |
| Covariance contribution | -0.16 |
| Combinations/Pair | 1.62 |
| Mean z-score | -1.25 |
| Structure conservation index | 0.49 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.99 |
| SVM RNA-class probability | 0.868828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22686471 54 - 27905053 -------UAUUCGUCACAAGACCGAGUCAUAAUUGAAAGGGGUUGGGAAAACCGUAACCUG -------.(((((((....)).)))))............((((((((....)).)))))). ( -10.50, z-score = -0.08, R) >droWil1.scaffold_181130 14029760 60 + 16660200 GGACUGGCAGCAUACAUCAACUUAAG-CAUAUACUCAUAUGUAUAAGCAGACAAAAGGCGG .........((.....((..((((.(-(((((....)))))).))))..))......)).. ( -9.30, z-score = -0.91, R) >droEre2.scaffold_4820 5115516 54 + 10470090 -------UUUUCUUCACAAAAGGGAGUUAUAAUUAAAAGAGGUUAGGGAAACCGUAACCUG -------((..(((.....)))..)).............((((((((....)).)))))). ( -13.60, z-score = -2.28, R) >droYak2.chr3R 5026582 54 + 28832112 -------UAUUCGUCACAAAUGCGAGUCAUAAUUAAAAGGGUUUAGGGAGACCGUAACCUG -------.((((((.......))))))...........(((((..((....))..))))). ( -13.30, z-score = -2.26, R) >droSim1.chr3R 22516930 54 - 27517382 -------UAUUCGUCACAAGAGCGAGCCAUAAUUAAAAGGGGUUAGGGAAAUCGUAACCUG -------..(((((.......))))).............((((((.(.....).)))))). ( -9.50, z-score = -0.70, R) >consensus _______UAUUCGUCACAAAAGCGAGUCAUAAUUAAAAGGGGUUAGGGAAACCGUAACCUG .......................................((((((((....)).)))))). ( -5.56 = -5.40 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:46 2011