| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,670,833 – 22,670,927 |
| Length | 94 |
| Max. P | 0.600624 |
| Location | 22,670,833 – 22,670,927 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Shannon entropy | 0.40883 |
| G+C content | 0.53971 |
| Mean single sequence MFE | -34.48 |
| Consensus MFE | -21.04 |
| Energy contribution | -21.12 |
| Covariance contribution | 0.08 |
| Combinations/Pair | 1.20 |
| Mean z-score | -1.40 |
| Structure conservation index | 0.61 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.22 |
| SVM RNA-class probability | 0.600624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22670833 94 + 27905053 -----GCAGGCCAAACUACGUUCGAUUGUUGGCAGACGACAGUCGGUUAAA-------------------UUGGGAUUCGGGAUCCGGUGUAUGGGGAAUCUGAUGUGGGAUGUGGGU -----.....(((..((((((((((((((((.....)))))))))......-------------------...((((((....((((.....)))))))))))))))))....))).. ( -28.90, z-score = -1.20, R) >droEre2.scaffold_4820 5099130 105 - 10470090 -----GCAGCCCAAACUACGUUCGAUUGUUGGCAGACGACAGUCGGUUAAAGGGGUUUGGCCA-------GUGGGAUUCUGAAUCCGGUAUGUGGGCAAUGCGAUGUGGAUGGUGGG- -----((((((((...(((..((((((((((.....))))))))))......(((((..(((.-------...))...)..))))).)))..)))))..)))...............- ( -34.60, z-score = -0.90, R) >droYak2.chr3R 5010567 106 - 28832112 GCAGCCCAAACCAAACUACAUUCGAUUGUUGGUAGACGACAGUCGGUUAAAGGGGUUUUGGCC-----AGUGGGAUUUUGGGAGCGGUUAUGUGGAGAAUGCGAUGUCGGG------- (((.((((((((...((((....((((((((.....))))))))((((((((...))))))))-----.))))......(....))))).)).))....))).........------- ( -30.30, z-score = -0.56, R) >droSec1.super_13 1444229 112 + 2104621 -----GCAGGCCAAACUACGUUCGAUUGUUGGCAGACGACAGUCGGUUAAAGGGGGUUGGCCAUUGGGAUUCGGGAUUCGGGAUCCGGUGUGUGGGGAAUCUGAUGUGGGAUGUGGG- -----.....(((..(((((((.((((.((.(((.((..((((.((((((......))))))))))((((((.(....).)))))).)).))).)).)))).)))))))....))).- ( -39.30, z-score = -2.18, R) >droSim1.chr3R 22501225 112 + 27517382 -----GCAGGCCAAACUACGUUCGAUUGUUGGCAGACGACAGUCGGUUAAAGGGGGUUGGCCAUUGGGAUUCGGGAUUCGGGAUCCGGUGUGUGGGGAAUCUGAUGUGGGAUGUGGG- -----.....(((..(((((((.((((.((.(((.((..((((.((((((......))))))))))((((((.(....).)))))).)).))).)).)))).)))))))....))).- ( -39.30, z-score = -2.18, R) >consensus _____GCAGGCCAAACUACGUUCGAUUGUUGGCAGACGACAGUCGGUUAAAGGGGGUUGGCCA_____A_UCGGGAUUCGGGAUCCGGUGUGUGGGGAAUCUGAUGUGGGAUGUGGG_ ..........(((..((((((((((((((((.....)))))))))..........................(.(((((...))))).)..............)))))))....))).. (-21.04 = -21.12 + 0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:44 2011