| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,647,471 – 22,647,546 |
| Length | 75 |
| Max. P | 0.642624 |
| Location | 22,647,471 – 22,647,546 |
|---|---|
| Length | 75 |
| Sequences | 7 |
| Columns | 75 |
| Reading direction | reverse |
| Mean pairwise identity | 77.97 |
| Shannon entropy | 0.45377 |
| G+C content | 0.56293 |
| Mean single sequence MFE | -25.84 |
| Consensus MFE | -15.15 |
| Energy contribution | -17.03 |
| Covariance contribution | 1.88 |
| Combinations/Pair | 1.33 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.32 |
| SVM RNA-class probability | 0.642624 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22647471 75 - 27905053 AGCCGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGGCCCGUUUGUUGGCCUCAG ..((((((((((....)).).))))))).((((((....)))))).........(((((........)))))... ( -28.70, z-score = -1.89, R) >droSec1.super_13 1421255 75 - 2104621 AGCCGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGCCCCGUUUGUUGGCCUCAG ..((((((((((....)).).))))))).........(((.((..((.((((........))))))..)).))). ( -27.00, z-score = -1.56, R) >droYak2.chr3R 4986955 75 + 28832112 AGACGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGGCCCGUUUGUUGGCCUCAG ...(((((((((....)).).))))))..((((((....)))))).........(((((........)))))... ( -25.70, z-score = -1.36, R) >droEre2.scaffold_4820 5074177 75 + 10470090 AGCCGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGGCCCGUUUGUUGGCUUUAG ..((((((((((....)).).))))))).((((((....))))))........((((((........)))))).. ( -27.50, z-score = -1.83, R) >droSim1.chr3R 22478644 75 - 27517382 AGCCGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGGCCCGUUUGUUGGCCUCAG ..((((((((((....)).).))))))).((((((....)))))).........(((((........)))))... ( -28.70, z-score = -1.89, R) >droAna3.scaffold_13340 7011790 75 + 23697760 AGUCGCUGUCGCGGAUGCCGCACAGCGGGCGACAUUAUGAUGUUAACGAAACAAAGGCCUGUUGUUUGCAACCCG ...((((((.((((...))))))))))((((((((....)))))..(........)))).((((....))))... ( -23.40, z-score = -0.47, R) >dp4.chr2 25966210 67 + 30794189 ----GCCAUUGUAGUUUUAGGGGGGCGGGGG----CGUGUCGCGGUAGACUCCACUGUUUCUCUGUUCCCAUCAA ----................(((((((((((----((...)))((......)).......))))))))))..... ( -19.90, z-score = 0.01, R) >consensus AGCCGCUGUCGCGGAAGCAGCACAGCGGGCGACAUUAUGAUGUUGACGAAACAAAGGCCCGUUUGUUGGCCUCAG ..((((((((((....)).).))))))).((((((....)))))).........(((((........)))))... (-15.15 = -17.03 + 1.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:43 2011