| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,753,997 – 8,754,096 |
| Length | 99 |
| Max. P | 0.877592 |
| Location | 8,753,997 – 8,754,096 |
|---|---|
| Length | 99 |
| Sequences | 11 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.31 |
| Shannon entropy | 0.41957 |
| G+C content | 0.45504 |
| Mean single sequence MFE | -31.51 |
| Consensus MFE | -18.95 |
| Energy contribution | -17.35 |
| Covariance contribution | -1.60 |
| Combinations/Pair | 1.40 |
| Mean z-score | -1.79 |
| Structure conservation index | 0.60 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.03 |
| SVM RNA-class probability | 0.877592 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8753997 99 + 23011544 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCA----- -------------.......((---((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....)))))).----- ( -33.70, z-score = -3.12, R) >droSim1.chr2L 8533191 99 + 22036055 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCA----- -------------.......((---((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....)))))).----- ( -33.70, z-score = -3.12, R) >droSec1.super_3 4227413 100 + 7220098 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACAACCGACCAC---- -------------.......((---((((.....(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))....))))))..---- ( -33.70, z-score = -3.31, R) >droYak2.chr2L 11396625 100 + 22324452 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACGCCCAACUCU---- -------------......(((---(.((((...(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))..)))).)))).---- ( -33.90, z-score = -2.87, R) >droEre2.scaffold_4929 9340957 91 + 26641161 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACA------------- -------------.((((((((---....((...)).((((....))))...))))))))...((((((((....((....))((........))..))))))))..------------- ( -25.10, z-score = -1.00, R) >droAna3.scaffold_12916 10392321 104 + 16180835 -------------UUUUACGGG---UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACGCCUGCCCAAAAAG -------------......(((---.(((((...(((.((((((.((.....)).))))))..))).((((.(((((....))((........))..)))))))..))))))))...... ( -36.10, z-score = -2.96, R) >dp4.chr4_group5 1537821 90 - 2436548 -------------UUUUACGGGG--UCUGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGCUGUGCCAUUUGCUGCA--------------- -------------.....(((((--.....)))))...((((((.((.....)).))))))..((((((((....(((..(((....))).)))...))))))))--------------- ( -28.60, z-score = -1.46, R) >droPer1.super_5 1506045 90 - 6813705 -------------UUUUACGGGG--UCUGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGCUGUGCCAUUUGCUGCA--------------- -------------.....(((((--.....)))))...((((((.((.....)).))))))..((((((((....(((..(((....))).)))...))))))))--------------- ( -28.60, z-score = -1.46, R) >droVir3.scaffold_12723 4746622 112 + 5802038 GCGGAGG-----UUAUUGUUGGGGGCCUGGUCUCGCAUAUUUAUUGAUAAUUUCCGUAAUUU---CAGCGACAAAGCAAAAACGGAAGUUAUGCCAUUUGCUGCACGCCUGCGAAAAGGA (((((((-----((((((.(((((((...))))).)).......))))))))))))).....---((((((....(((..(((....))).)))...))))))....(((......))). ( -30.20, z-score = -0.11, R) >droMoj3.scaffold_6500 10714041 117 + 32352404 GCGGAGGUUUAUAUUUUGCGGCGCGGCUGGUCUCGCAUAUUUAUUGAUAAUUUCCGUAAUUU---CAGCGACAAAGCAAAAACGGAAGUUAUGCCAUUUGCUGCACGCCUGCAAAAAGGA .............((((((((((((((((((....((.......))(((((((((((.....---..((......))....)))))))))))))))...)))))..))).)))))).... ( -32.10, z-score = -0.22, R) >droGri2.scaffold_15126 7747378 112 + 8399593 UUCGAGG-----GGUUUGUGGGCUGCCUGGUCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUU---CAGCGACAAAGCAAAAACGGAAGUUAUGCCAUUUGCUGCACGCCUGCGAAAAGGA .......-----..((((..((((((......((((..((((((.((.....)).)))))).---..))))...(((((((((....)))......))))))))).)))..))))..... ( -30.90, z-score = -0.08, R) >consensus _____________UUUUACGGG___UCGGGCCUCGCAUAUUUAUUGAUAAUUUCCGUGAAUUUUGCAGCAGUCAAGCGAAAGCGGAAGUUAUGCCAUUUGCUGCACGCCCGACCA_____ ..............(((((((........((...)).((((....))))....))))))).....((((((....(((..(((....))).)))...))))))................. (-18.95 = -17.35 + -1.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:51 2011