| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,624,089 – 22,624,192 |
| Length | 103 |
| Max. P | 0.981534 |
| Location | 22,624,089 – 22,624,192 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 68.10 |
| Shannon entropy | 0.58884 |
| G+C content | 0.41474 |
| Mean single sequence MFE | -25.40 |
| Consensus MFE | -12.14 |
| Energy contribution | -11.78 |
| Covariance contribution | -0.35 |
| Combinations/Pair | 1.53 |
| Mean z-score | -1.97 |
| Structure conservation index | 0.48 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 2.08 |
| SVM RNA-class probability | 0.981534 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22624089 103 + 27905053 -------AUUCGU-GUGUCUCUCUCUUUUUCUCCCACGCAUCUGUACCUUCGAACGGUAUUUGUGGGGUAGAAGAAAUUGCUCGACUUAUUAUAUCGUUUGCCACUCAGAA -------.(((..-(((........((((((((((.((((...(((((.......))))).))))))).)))))))...((.(((.........)))...)))))...))) ( -24.90, z-score = -1.77, R) >droWil1.scaffold_181130 13944719 108 - 16660200 AGUAUGUAUGCACCAUGGGUGAAAAAUUAAUUAUCUGACAUAAAUAUUUAUUA-UGUUGGCUCUGGAUAAGAAGAAACUACUCAGAAGUACCGGAUAGAAGCUUGAAAA-- (((.......((((...)))).........(((((((((((((.......)))-)))..((((((..((.........))..))).)))..)))))))..)))......-- ( -15.90, z-score = 0.69, R) >droSim1.chr3R 22455505 103 + 27517382 -------AUUCGU-GUGUCUCUCUCUUUUUCUCCCUCGCAUCUGUACCUACGAACGGUAUUUGUGGGGUAGAAGGAACUGCUCGACUAAAUAUGUCGUUUGUCACACAUAA -------....((-(((.(......(((((((.(((((((...(((((.......))))).))))))).)))))))......((((.......))))...).))))).... ( -32.70, z-score = -4.13, R) >droSec1.super_13 1398136 101 + 2104621 -------AUUCGU-GUGUCUCUCUGUUUUUCUCCCUCGCAUCUGUACCUACGAACGGUAUUUGUGGGGUAGAAGGAACUGCUCGACUAAAUGUGUCGCUUGUCACACAU-- -------....((-(((.(......(((((((.(((((((...(((((.......))))).))))))).)))))))......((((.......))))...).)))))..-- ( -32.60, z-score = -3.41, R) >droYak2.chr3R 4963187 103 - 28832112 -------AUUCGU-GUGUCUCUCUCUUUUUCUCCCUCGCAUCUGUACUUACGAACGGAAUUUGUAGGGUAGAAGGACUUACUCGACUUAAUACGUCACUUGUCACACAGAU -------....((-(((.(......(((((((((((.((((((((........)))))...))))))).))))))).......(((.......)))....).))))).... ( -25.80, z-score = -1.58, R) >droEre2.scaffold_4820 5051020 103 - 10470090 -------AUUCGU-GUAUAUCUCUCUUUUUCUCCCUCGCAUUCAUACUAACGAACGGUAUUUGCAGGGUAGAAUGAUUUACUCGACUUAAUAUGCCGCCUGCCACACAAUA -------..(((.-(((.(((..(((......((((.(((...(((((.......))))).))))))).)))..))).))).))).......................... ( -20.50, z-score = -1.66, R) >consensus _______AUUCGU_GUGUCUCUCUCUUUUUCUCCCUCGCAUCUGUACCUACGAACGGUAUUUGUGGGGUAGAAGGAACUACUCGACUUAAUAUGUCGCUUGCCACACAAAA .........................(((((((((((.(((...(((((.......))))).))))))).)))))))................................... (-12.14 = -11.78 + -0.35)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:37 2011