| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,622,749 – 22,622,817 |
| Length | 68 |
| Max. P | 0.755711 |
| Location | 22,622,749 – 22,622,817 |
|---|---|
| Length | 68 |
| Sequences | 12 |
| Columns | 79 |
| Reading direction | forward |
| Mean pairwise identity | 81.75 |
| Shannon entropy | 0.36405 |
| G+C content | 0.35710 |
| Mean single sequence MFE | -15.07 |
| Consensus MFE | -11.53 |
| Energy contribution | -11.32 |
| Covariance contribution | -0.21 |
| Combinations/Pair | 1.12 |
| Mean z-score | -1.27 |
| Structure conservation index | 0.77 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.755711 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22622749 68 + 27905053 ----------GUAUAUAGAAUGUAUCUUUCGGAUACCAAUUGCCAUUAGUUUAUUGAGAAUCCG-AAAUUUAUGGCUCU ----------......(((.((((..((((((((.(((((.((.....))..)))).).)))))-)))..))))..))) ( -14.20, z-score = -1.76, R) >droSim1.chr3R 22454195 68 + 27517382 ----------GUAUAUAGAAUGUAUCUUUCGGAUACCAAUUGCCAUUAGUUUAUUGAGAAUCCG-AAAUUUAUGGCUCU ----------......(((.((((..((((((((.(((((.((.....))..)))).).)))))-)))..))))..))) ( -14.20, z-score = -1.76, R) >droSec1.super_13 1396824 68 + 2104621 ----------GUAUAUAGAAUGUAUCUUUCGGAUACCAAUUGCCAUUAGUUUAUUGAGAAUCCG-AAAUUUAUGGCUCU ----------......(((.((((..((((((((.(((((.((.....))..)))).).)))))-)))..))))..))) ( -14.20, z-score = -1.76, R) >droYak2.chr3R 4961814 68 - 28832112 ----------AUAUAUGGGAUGUAUCUUUCGGAUACCAAUUGCCAUUAGUUUAUUGAGAAUCUG-AAAUUUAUGGCUCU ----------......(((..(((..((((((((.(((((.((.....))..)))).).)))))-)))..)))..))). ( -14.00, z-score = -1.01, R) >droEre2.scaffold_4820 5049683 68 - 10470090 ----------AUAUCUAGAAUGUAUCUUUCGGAUACCAAUUGCCAUUAGUUUAUUGAGAAUCUG-AAAUUUAUGGCUCU ----------...........(((((.....))))).....(((((.(((((...(.....)..-))))).)))))... ( -12.40, z-score = -0.98, R) >droAna3.scaffold_13340 6988032 68 - 23697760 ----------GCGCGUCGAAUGUAUCUUUCGGAUAGCAAUUGCCAUUAGUUUAUUGAGAAUCUC-AAAUUUAUGGCACU ----------((...(((((.......)))))...))...((((((.((((...((((...)))-))))).)))))).. ( -17.00, z-score = -1.80, R) >dp4.chr2 25941391 69 - 30794189 ----------GCGCAUCGAAUGUAUCUUUCGGAUACAAAUUGCCAUUAGUUUAUUGAGAAUCUCGAAAUUUAUGGCUCG ----------......(((.((((((.....))))))....(((((.((((..(((((...))))))))).)))))))) ( -16.50, z-score = -1.80, R) >droPer1.super_19 1318520 69 - 1869541 ----------GCGCAUCGAAUGUAUCUUUCGGAUACAAAUUGCCAUUAGUUUAUUGAGAAUCUCGAAAUUUAUGGCUCG ----------......(((.((((((.....))))))....(((((.((((..(((((...))))))))).)))))))) ( -16.50, z-score = -1.80, R) >droWil1.scaffold_181130 13943012 69 - 16660200 ----------GCGAGUCGAAUGUAUCUUUCAGAUACAAAUUGCCAUUAGUUUAUUGAGCAUCUGAAAAUUUAUGGCACU ----------..........((((((.....))))))...((((((.(((((...(.....)...))))).)))))).. ( -14.50, z-score = -1.37, R) >droVir3.scaffold_13047 11938823 78 + 19223366 GAACUCGGACUUGGCUCGCAUGUAUCUAUCAGAUACAAAUUGCCAUUAGUUUAUUGAGCGGCUG-GAAUUUAUGGUUCU (((((.....(..((.(((..(((((.....)))))((((((....)))))).....)))))..-).......))))). ( -17.90, z-score = -0.85, R) >droMoj3.scaffold_6540 4313366 78 - 34148556 GGAAUCGGACCUGGCUCGCAUGUAUCUUUCAGAUACAAAUUGCCAUUAGUUUAUUGAGCGGCUG-GAAUUUAUGGUUCU (((((((...(..((.(((..(((((.....)))))((((((....)))))).....)))))..-)......))))))) ( -20.60, z-score = -1.34, R) >droGri2.scaffold_14624 2088601 63 + 4233967 ---------------UCGCAUGUAUGUUUCAGAUACAAAUUGCCAUUAGUUUAUUGAGCGGCUG-GAAUUUAUGGUUCU ---------------...((((...(((((((.......((((((.........)).)))))))-)))).))))..... ( -8.81, z-score = 1.00, R) >consensus __________GUGUAUCGAAUGUAUCUUUCGGAUACAAAUUGCCAUUAGUUUAUUGAGAAUCUG_AAAUUUAUGGCUCU .....................(((((.....))))).....(((((.(((((...(.....)...))))).)))))... (-11.53 = -11.32 + -0.21)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:37 2011