| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,614,244 – 22,614,351 |
| Length | 107 |
| Max. P | 0.588371 |
| Location | 22,614,244 – 22,614,351 |
|---|---|
| Length | 107 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.38 |
| Shannon entropy | 0.41377 |
| G+C content | 0.53985 |
| Mean single sequence MFE | -29.28 |
| Consensus MFE | -19.83 |
| Energy contribution | -20.13 |
| Covariance contribution | 0.31 |
| Combinations/Pair | 1.29 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.68 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.588371 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22614244 107 - 27905053 ACCCUGAAAACUACCACAUAUGUGCUCACGGAGCUCAUGGCGUUGUCGUCAUGACCC-AAAAUUGC-GCCGGAAUGGCCCACUUA-AAGGCGCCGUGAAGCCUGCUACAG---- ...(((........(((....))).((((((.(.((((((((....)))))))))))-......((-(((.....(.....)...-..))))).)))).........)))---- ( -29.80, z-score = -0.64, R) >droSim1.chr3R 22445763 107 - 27517382 ACCCUGAAAACUACCACAUAUGAGCUCACGGAGCUCGUGGCGUUGUCGUCAUGACCC-AAAAUUGC-GCCGGAAUGGCCCACUUA-AAGGCGCCGUGAAGCCUGCUACAG---- ...(((.......((....((((((((...))))))))(((((.(((.....)))..-......))-))))).(((((((.....-..)).)))))...........)))---- ( -30.10, z-score = -0.57, R) >droSec1.super_13 1388368 107 - 2104621 ACCCUGAAAACUACCACAUAUGAGCUCACGGAGCUCGUGGCGUUGUCGUCAUGACCC-AAAAUUGC-GCCGGAAUGGCCCACUUA-AAGGCGCCGUGAAGCCUGCUACAG---- ...(((.......((....((((((((...))))))))(((((.(((.....)))..-......))-))))).(((((((.....-..)).)))))...........)))---- ( -30.10, z-score = -0.57, R) >droYak2.chr3R 4952928 106 + 28832112 ACCCUGAAAACUACCACAUAAGCG----UGAAGCUCAUGGCGUUGUCGCCAUGACCCAAAAAUUGUACCCGGAAUGGCCCACUUAGAAGGCGCCGUGAAGCCUGCUACAG---- ...(((........(((......)----)).(((((((((((....))))))))................((.(((((((........)).)))))....)).))).)))---- ( -29.90, z-score = -1.94, R) >droEre2.scaffold_4820 5041184 104 + 10470090 ACCCUGAAAACUACCACAUAAGAG----UGGAGCUCAUGGCGUUGUCGCCAUGACCCAAAAAUGGU-CCCGGAAUGGCCCACUUA-AAGGCGCCGUGAAGCCUGCUACAG---- ...(((.......((((......)----)))(((((((((((....)))))))).(((....))).-...((.(((((((.....-..)).)))))....)).))).)))---- ( -33.80, z-score = -2.43, R) >droWil1.scaffold_181130 13923884 91 + 16660200 CCCACACAAACCAUUACGUAAAAG-----GGAGC-CAGAGAG----CGGCAGUAC------------CUUCAAAUGGCCUACUUUCAAGGCGCCAUCACGUUGGUU-CAGCGAG ........(((((..((((.....-----((.((-(.(((((----.(((.((..------------......)).)))..)))))..))).))...)))))))))-....... ( -22.00, z-score = -0.57, R) >consensus ACCCUGAAAACUACCACAUAAGAG____CGGAGCUCAUGGCGUUGUCGUCAUGACCC_AAAAUUGC_CCCGGAAUGGCCCACUUA_AAGGCGCCGUGAAGCCUGCUACAG____ .............................(.(((((((((((....))))))))................((.(((((((........)).)))))....)).))).)...... (-19.83 = -20.13 + 0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:36 2011