| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,609,698 – 22,609,818 |
| Length | 120 |
| Max. P | 0.708798 |
| Location | 22,609,698 – 22,609,818 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 77.67 |
| Shannon entropy | 0.42998 |
| G+C content | 0.49754 |
| Mean single sequence MFE | -39.53 |
| Consensus MFE | -21.58 |
| Energy contribution | -23.51 |
| Covariance contribution | 1.93 |
| Combinations/Pair | 1.37 |
| Mean z-score | -1.64 |
| Structure conservation index | 0.55 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.47 |
| SVM RNA-class probability | 0.708798 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22609698 120 - 27905053 GAGUUCAACGCAGGGCGAGGGAAACUGUACCACCUGUGCUGCUUGGGUCGAGCGUGCGGUAUGUGGCUAUAAUAAUAGAUGCUUUACGAGUUUCAAGAGCACCUGCGAAAUGGAAAUGAU ...((((.((((((((....((((((((((((((((..(.(((((...))))))..)))...))))((((....))))......))).))))))....)).))))))...))))...... ( -39.50, z-score = -1.92, R) >droAna3.scaffold_13340 6973332 117 + 23697760 GGGAGCAGUAGCACGUAAGGGA---UGCAAAAAUUGCAAUAAAAUGAGUGACUGGCCAGUUUGUGCAUUUAACCAACGAUGUUACUGCAUCUUUAAAAACUCAUGCGAAAUGGAACAGAC ((((((((((((((((...((.---((((.....))))...(((((...((((....))))....)))))..)).))).))))))))).)))).......((((.....))))....... ( -29.10, z-score = -1.39, R) >droEre2.scaffold_4820 5036596 120 + 10470090 GGGUGCCACGCAGGGCGAGGGCAACUGUACCACCUGCGCUGCUUGGGUGGAUCAUGCGGUGUGUGGCUUUAAUAAUAGAUGCUACACCAGUUUCAAGAGCUCCUGCGAACUGGAAAUGAU .....(((((((((((....(.(((((..((((((((...))..))))))..........(((((((((((....)))).)))))))))))).)....)).))))))...)))....... ( -40.60, z-score = -0.25, R) >droYak2.chr3R 4948057 120 + 28832112 AAGUGCAACACGGGGCGAUGGCAACUGCACCACCUGCGCUGCGUGGGUGGAUCGUGCGGUGUGUGGCUUUAAUAACAGAUGCUACACCAGUUUCAAGAGCUCCUGCGAACUGGAAAUGAU .......((((.(.(((((.((....)).(((((..((...))..)))))))))).).))))(((((.............))))).(((((((..((.....))..)))))))....... ( -43.12, z-score = -1.06, R) >droSec1.super_13 1383862 120 - 2104621 GAGGUCAACGCAGGGCGAGGGAAAUUGUACCAACUGCGCUGCUUGGGUCGAGCGUGCGGUAUGUGGCUAUAAUAAUAGAUGCUACACCAGUUUCAAGAGCACCUGCGAAAUGGAAAUGAU ........((((((((....(((((((.....(((((((.(((((...)))))))))))).((((((.............)))))).)))))))....)).))))))............. ( -43.22, z-score = -2.94, R) >droSim1.chr3R 22441244 120 - 27517382 GAGUUCAACGCAGGGCGAGGGAAACUGUACCACCUGCGCUGCUUGGGUCGAGCGUGCGGUAUGUGGCUAUAAUAAUAGAUGCUACACCAGUUUCAAGAGCACUUGCGAAAUGGAAAUGAU ...((((.((((((((....(((((((....(((.((((.(((((...)))))))))))).((((((.............)))))).)))))))....)).))))))...))))...... ( -41.62, z-score = -2.31, R) >consensus GAGUGCAACGCAGGGCGAGGGAAACUGUACCACCUGCGCUGCUUGGGUCGAGCGUGCGGUAUGUGGCUAUAAUAAUAGAUGCUACACCAGUUUCAAGAGCACCUGCGAAAUGGAAAUGAU ........((((((((....(((((((......((((((..............))))))..((((((.............)))))).)))))))....)).))))))............. (-21.58 = -23.51 + 1.93)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:35 2011