| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,602,387 – 22,602,482 |
| Length | 95 |
| Max. P | 0.969620 |
| Location | 22,602,387 – 22,602,482 |
|---|---|
| Length | 95 |
| Sequences | 11 |
| Columns | 106 |
| Reading direction | forward |
| Mean pairwise identity | 73.76 |
| Shannon entropy | 0.55015 |
| G+C content | 0.59736 |
| Mean single sequence MFE | -38.38 |
| Consensus MFE | -22.45 |
| Energy contribution | -21.74 |
| Covariance contribution | -0.72 |
| Combinations/Pair | 1.32 |
| Mean z-score | -1.58 |
| Structure conservation index | 0.59 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.82 |
| SVM RNA-class probability | 0.969620 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22602387 95 + 27905053 --UGGCCCAAAGACGGUCCGUCCCGCUCCG-----GCCGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGAUAUGG----CGCCCAGCAGGUGG --.((((...((.(((......)))))..)-----))).((((((....((.((((((((((((.....)))))))))))))))))))----)(((.....))).. ( -40.20, z-score = -1.60, R) >droSec1.super_13 1376410 95 + 2104621 --UGGCCCAAAGACGGUCCGUCCCGCUCCG-----GCCGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGAUAUGG----CGCCCAGCAGGUGG --.((((...((.(((......)))))..)-----))).((((((....((.((((((((((((.....)))))))))))))))))))----)(((.....))).. ( -40.20, z-score = -1.60, R) >droYak2.chr3R 4940576 96 - 28832112 -UGGGCCCAAAGAUGGUCCGUCCCGUUUCG-----AGCGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGAUAUGG----CGCCCAGCAGGUGG -((((((((...((((.(((..(......)-----..))))))).....((.((((((((((((.....))))))))))))))..)))----.)))))........ ( -42.00, z-score = -2.68, R) >droEre2.scaffold_4820 5025691 95 - 10470090 --UGGCCCAAAGACGGUCCGUCCCGCUCCG-----ACCGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGAUAUGG----CACCCAGCAGGUGG --..(((......(((((.(.......).)-----))))((((((....((.((((((((((((.....)))))))))))))))))))----)........))).. ( -36.90, z-score = -1.62, R) >droAna3.scaffold_13340 6966504 98 - 23697760 --UGCCCCAAAGAAGGUCCGGUCCGUCUCUCU--GGCAGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGGUAUGG----CUCCCAGCAGGUGG --..((((..(((.((......)).)))..((--((..((((((((......((((((((((((.....)))))))))))).))))))----)).))))..)).)) ( -38.30, z-score = -1.71, R) >dp4.chr2 25918295 106 - 30794189 UUCGGGCCAGAGAAGCUUCGCCCCGCUCCGCUCCAGCCGGCCAUAUGUUCCACUAAUGGUCGCGCACAUUGCGGCCAUUAGAGGAAGGCAACCGCCCGGCAGGUGG ...((((.((.....))..))))....(((((...(((((.(.....((((.((((((((((((.....)))))))))))).))))(....).).))))).))))) ( -45.20, z-score = -1.83, R) >droPer1.super_19 1295636 106 - 1869541 UUCGGGCCAGAGAAGCUUCGCCCCGCUCCGCUCCAGCCGGCCAUAUGUUCCACUAAUGGUCGCGCACAUUGCGGCCAUUAGAGGAAGGCAACCGCCCGGCAGGUGG ...((((.((.....))..))))....(((((...(((((.(.....((((.((((((((((((.....)))))))))))).))))(....).).))))).))))) ( -45.20, z-score = -1.83, R) >droWil1.scaffold_181130 13903237 98 - 16660200 ---GGCCCAAAGAAGAAUCUGGGUCUUGGGUCUGCUUUGGCCAUAUGUUUCACUAAUGGUCGCGCACAGUGCGGCCAUUAGAGAGGGCU-----CGCUGCAGGUGG ---((((((..........)))))).....(((((..(((((......(((.(((((((((((((...))))))))))))).)))))).-----))..)))))... ( -40.50, z-score = -2.32, R) >droVir3.scaffold_13047 11907195 85 + 19223366 ----GGCUAAAGAA-----UGCCCGCG--------UCUGGCCAUAUGUUUCACUAAUGGCCGCGCACAUUGCGGUCAUUAGGGG-AGCC---GCUGCUGCAGAUGG ----(((.......-----.)))..((--------((((((.....(((((.((((((((((((.....)))))))))))).))-))).---...))..)))))). ( -34.60, z-score = -1.64, R) >droMoj3.scaffold_6540 4277606 85 - 34148556 ----GGCCAAAGAA-----AGCCCGCG--------CCUGGCCAUAUGUUUCACUAAUGGCCGUGCACAUUGCGGUCAUUAGGGG-AGCC---GCAACUGCAGAUGG ----(((((..(..-----......).--------..)))))....(((((.(((((((((((.......))))))))))).))-))).---((....))...... ( -30.00, z-score = -0.51, R) >droGri2.scaffold_14624 2042173 90 + 4233967 ---GGCCCAAAGAAA----UGCCCGCCGC------CUUGGCCAUAUGUUUCACUAAUGGCCGCGCACAUUGCGGUCAUUAAGGGUAGCC---CAGCCUGCAGAUGU ---(((.........----((((((((..------...)))............(((((((((((.....))))))))))).)))))...---..)))......... ( -29.04, z-score = 0.01, R) >consensus ___GGCCCAAAGAAGGUCCGGCCCGCUCCG_____GCCGGCCAUAUGUUUCACUAAUGGUCGCGCACAUUGCGGCCAUUAGGGGAAGG____CGCCCAGCAGGUGG ........................................((((.(((....((((((((((((.....))))))))))))....(((.......)))))).)))) (-22.45 = -21.74 + -0.72)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:33 2011