| Sequence ID | dm3.chr2L |
|---|---|
| Location | 8,746,827 – 8,746,924 |
| Length | 97 |
| Max. P | 0.801919 |
| Location | 8,746,827 – 8,746,924 |
|---|---|
| Length | 97 |
| Sequences | 8 |
| Columns | 106 |
| Reading direction | reverse |
| Mean pairwise identity | 85.89 |
| Shannon entropy | 0.29011 |
| G+C content | 0.40726 |
| Mean single sequence MFE | -17.76 |
| Consensus MFE | -14.39 |
| Energy contribution | -15.33 |
| Covariance contribution | 0.94 |
| Combinations/Pair | 1.24 |
| Mean z-score | -1.51 |
| Structure conservation index | 0.81 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.73 |
| SVM RNA-class probability | 0.801919 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr2L 8746827 97 - 23011544 ---------ACAACAACGGCUGUAUCCUCGUUUAUAGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------........(((((((........)))))))..............(((((((((........((((((.............))))))))))))).)). ( -19.52, z-score = -2.11, R) >droPer1.super_5 5315421 106 - 6813705 ACAGCAACAACAGCGACCGCCGCCGCUUCUUUUAUAGCCUCAAAAAAUCCCCCAGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ...((((....((((........)))).........(((...((((((......(((((((..........)).)))))...))))))..)))..))))....... ( -16.60, z-score = -0.54, R) >droAna3.scaffold_12916 10384410 96 - 16180835 ---------ACAACAAGGGCUAUGUCUACGUUUAUAGCUUCG-AAAAUCCCCCAGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------.......((((((((........))))))))..-...........((((((((........((((((.............))))))))))))).).. ( -16.62, z-score = -0.46, R) >droEre2.scaffold_4929 9333755 97 - 26641161 ---------ACAACAACGGCUGUAUCCCCGUUUAUGGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------........(((((((........)))))))..............(((((((((........((((((.............))))))))))))).)). ( -18.22, z-score = -0.80, R) >droYak2.chr2L 11389194 97 - 22324452 ---------ACAACAACGGCUGUAUCCUCGUUUAUAGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGGCAC ---------........(((((((........)))))))..............(((((((((........((((((.............)))))))))))).))). ( -19.52, z-score = -1.38, R) >droSec1.super_3 4220144 97 - 7220098 ---------ACAACAACGGCUGUAUCCUCGUUUAUAGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------........(((((((........)))))))..............(((((((((........((((((.............))))))))))))).)). ( -19.52, z-score = -2.11, R) >droSim1.chr2L 8525997 97 - 22036055 ---------ACAACAACGGCUGUAUCCUCGUUUAUAGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------........(((((((........)))))))..............(((((((((........((((((.............))))))))))))).)). ( -19.52, z-score = -2.11, R) >droVir3.scaffold_12723 4733419 78 - 5802038 ---------------------------ACAACUAAACCCACA-AAAAUCCCCCCGCGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC ---------------------------...............-...........((((((((........((((((.............))))))))))))))... ( -12.52, z-score = -2.59, R) >consensus _________ACAACAACGGCUGUAUCCUCGUUUAUAGCCUCGAAAAAUCCCCCUGUGUGCAAUAUUUAUCAUGUCACAUAAUAUUUUUCUGGCAUUUGCACGUCAC .................(((((((........)))))))...............((((((((........((((((.............))))))))))))).).. (-14.39 = -15.33 + 0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Tue Apr 19 21:26:50 2011