| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,600,011 – 22,600,074 |
| Length | 63 |
| Max. P | 0.997828 |
| Location | 22,600,011 – 22,600,074 |
|---|---|
| Length | 63 |
| Sequences | 5 |
| Columns | 81 |
| Reading direction | forward |
| Mean pairwise identity | 67.61 |
| Shannon entropy | 0.52437 |
| G+C content | 0.59968 |
| Mean single sequence MFE | -29.56 |
| Consensus MFE | -21.90 |
| Energy contribution | -22.38 |
| Covariance contribution | 0.48 |
| Combinations/Pair | 1.22 |
| Mean z-score | -2.26 |
| Structure conservation index | 0.74 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 3.19 |
| SVM RNA-class probability | 0.997828 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22600011 63 + 27905053 -------------GCUGGCAAUCGGUUGUGGACAUGGCCAUCGUUCCAGAUGGCUACUUCCUCCAUGGGCCAGGGG----- -------------.(((((....((....(((..((((((((......))))))))..))).))....)))))...----- ( -28.30, z-score = -2.32, R) >droEre2.scaffold_4820 5023350 70 - 10470090 GUUGGCAAUCGGAACAGGGAUGUGGUUGUGGAUGUGGCCGUCGUUCCAGAUGGCUACUUCCUCCCAGGGG----------- ....(((((((.(.......).)))))))(((.(((((((((......))))))))).))).((....))----------- ( -25.70, z-score = -0.85, R) >droYak2.chr3R 4938118 81 - 28832112 GCUGCCAAUCGGAACAGGGAUGUGGUUGUGGAUGUGGCCGUCGUUCCAGAUGGCUACGUCCUCCUAUUUCCUAACUCAGGG .(((((....))....((((.((((....(((((((((((((......)))))))))))))..)))).))))....))).. ( -33.40, z-score = -2.77, R) >droSec1.super_13 1374067 63 + 2104621 -------------GCUGGCAAUCGGUUGUGGACAUGGCCGUCGUUCCAGAUGGCUACUUCCGCCGUGAGCCGGGUU----- -------------.(((((...((((...(((..((((((((......))))))))..)))))))...)))))...----- ( -30.20, z-score = -2.88, R) >droSim1.chr3R 22431949 63 + 27517382 -------------GCUGGCAAUCGGUUGUGGACAUGGCCGUCGUUCCAGAUGGCUACUUCCGCCGUGAGCCGGGGU----- -------------.(((((...((((...(((..((((((((......))))))))..)))))))...)))))...----- ( -30.20, z-score = -2.46, R) >consensus _____________GCUGGCAAUCGGUUGUGGACAUGGCCGUCGUUCCAGAUGGCUACUUCCUCCGUGAGCCGGGGU_____ ..............(((((....((....(((..((((((((......))))))))..))).))....)))))........ (-21.90 = -22.38 + 0.48)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:32 2011