| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,553,663 – 22,553,713 |
| Length | 50 |
| Max. P | 0.937488 |
| Location | 22,553,663 – 22,553,713 |
|---|---|
| Length | 50 |
| Sequences | 5 |
| Columns | 50 |
| Reading direction | forward |
| Mean pairwise identity | 96.80 |
| Shannon entropy | 0.05328 |
| G+C content | 0.35600 |
| Mean single sequence MFE | -8.41 |
| Consensus MFE | -8.14 |
| Energy contribution | -7.90 |
| Covariance contribution | -0.24 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.82 |
| Structure conservation index | 0.97 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.937488 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22553663 50 + 27905053 AAAUAAUGGCCUUGUCUUUGAAAAUCUGAAAAUACUCGGGGAAAUGCUAC ......((((....(((((((..............)))))))...)))). ( -7.44, z-score = -1.30, R) >droEre2.scaffold_4820 4972462 50 - 10470090 AAAUAAUGGCCUUGUCUUUGAGAAUCUCAAAAUACUCGGGGAAAUGCUAC ......((((....((((((((.((......)).))))))))...)))). ( -10.70, z-score = -2.16, R) >droYak2.chr3R 4889537 50 - 28832112 AAAUAAUGGCCUUGUCUUUGAAAAUCUCAAAAUACUCGGGGAAAUGCUAC ......((((....(((((((..............)))))))...)))). ( -7.44, z-score = -1.16, R) >droSec1.super_13 1327731 50 + 2104621 AAAUAAUGGCCUUGUCUUUGAAAAUCUGAAAAUACUCGGAGAAAUGCUAC ......((((....(((((((..............)))))))...)))). ( -8.24, z-score = -2.25, R) >droSim1.chr3R 22383254 50 + 27517382 AAAUAAUGGCCUUGUCUUUGAAAAUCUGAAAAUACUCGGAGAAAUGCUAC ......((((....(((((((..............)))))))...)))). ( -8.24, z-score = -2.25, R) >consensus AAAUAAUGGCCUUGUCUUUGAAAAUCUGAAAAUACUCGGGGAAAUGCUAC ......((((....(((((((..............)))))))...)))). ( -8.14 = -7.90 + -0.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:28 2011