| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,546,960 – 22,547,052 |
| Length | 92 |
| Max. P | 0.544712 |
| Location | 22,546,960 – 22,547,052 |
|---|---|
| Length | 92 |
| Sequences | 9 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 63.60 |
| Shannon entropy | 0.77534 |
| G+C content | 0.57623 |
| Mean single sequence MFE | -27.88 |
| Consensus MFE | -9.69 |
| Energy contribution | -9.92 |
| Covariance contribution | 0.23 |
| Combinations/Pair | 1.79 |
| Mean z-score | -0.96 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.10 |
| SVM RNA-class probability | 0.544712 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22546960 92 + 27905053 CCCCGGCUGCAUU-CGAAUCCAGAGUGCUCGAGUGGCCAAAGUUGGAGGAGCUGCUGUUGUUACUCUGGCUGUGGUUGUUGUGUCCGCCAGUG ....(((.(((((-(.......))))))...((..((((.(((..(((.(((.......))).)))..))).))))..))......))).... ( -33.60, z-score = -1.62, R) >droSim1.chr3R 22376389 92 + 27517382 CCCCGGCUGCAUU-CGAAUCCAGAGUGCUCGAGUGGCCGAAGUUGGAGGAGCUGCUGUUGUUACUCUGGCUGUGGUUGUUGUGUCCGCCAGUG ....(((.(((((-(.......))))))...((..((((.(((..(((.(((.......))).)))..))).))))..))......))).... ( -32.90, z-score = -1.28, R) >droSec1.super_13 1320885 92 + 2104621 CCCCGGCUGCAUU-CGAAUCCAGAGUGCUCGAGUGGCCGAAGUUGGAGGAACUGCUGUUGUUACUCUGGCUGUGGUUGUUGUGUCCGCCCGUG ....(((.(((((-(.......))))))...((..((((.(((..(((.(((.......))).)))..))).))))..))......))).... ( -32.00, z-score = -1.48, R) >droYak2.chr3R 4882541 92 - 28832112 CACCAGCCGCACC-CGAAUCCAGGGUGCUCGAGUGGCCAAAGUUGGAGGAGCUGCUGUUGUUACUCUGGCUGUGGUUGUUGUGUCCGCCAGUG (((..((.(((((-(.......))))))...((..((((.(((..(((.(((.......))).)))..))).))))..))......))..))) ( -35.80, z-score = -1.27, R) >droEre2.scaffold_4820 4965402 92 - 10470090 CGCCAGCCGCACC-CGAAUCCAGAGUGCUCGAGUGGCCAAAGUUGGAGGAGCUGCUGUUGUUACUCUGACUGUGGUUGUUGUGUCCGCCAGUG (((..((.((((.-(.......).))))...((..((((.(((..(((.(((.......))).)))..))).))))..))......))..))) ( -28.20, z-score = 0.04, R) >droAna3.scaffold_13340 6909552 72 - 23697760 -----------CC-CGAUUCCAGAUUGCUUGCUUGACCGAAGUUGGAUGAGCUGCUGUGGUUGCUCUGACUGUGGUUCCCGCUG--------- -----------..-((((..(((...((((..(..((....))..)..))))..)))..))))........((((...))))..--------- ( -18.30, z-score = -0.72, R) >dp4.chr2 25855823 78 - 30794189 CCCGGGCUGGACCGUUCGGCCAGCUCGAACACGGACUUAAGGUCCCCGAUGUCGCUGCCGACGCCCAUGUUCUUGCUG--------------- ...(((((((.((....)))))))))(((((.((((.....)))).....((((....)))).....)))))......--------------- ( -29.60, z-score = -1.49, R) >droWil1.scaffold_181130 10029342 76 - 16660200 UGCCCGAUGUCGA-UGAUUCCAACGUGCUGGAAUUGCCAAAAUUCGAGGAGCUGCUGUUGUUACUAUUGCUGUGAUU---------------- ..(((((....(.-.(((((((......)))))))..).....))).))(((....((....))....)))......---------------- ( -14.50, z-score = 0.42, R) >droVir3.scaffold_13047 11836888 86 + 19223366 CUGUGCCCGCGCC-CGACUCCAGCGCCGUGGAGUGAGCGAAAUUUGUGGAGCUGCUGUUGCUGCUCCUGUUGUUGUUGUGAUUACUG------ ..(((..(((((.-(.((((((......))))))).)).........(((((.((....)).)))))..........)))..)))..------ ( -26.00, z-score = -1.26, R) >consensus CCCCGGCUGCACC_CGAAUCCAGAGUGCUCGAGUGGCCAAAGUUGGAGGAGCUGCUGUUGUUACUCUGGCUGUGGUUGUUGUGUCCGCC_GUG ..................................(((((.(((..(((.(((.......))).)))..))).)))))................ ( -9.69 = -9.92 + 0.23)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:27 2011