| Sequence ID | dm3.chr3R |
|---|---|
| Location | 22,511,506 – 22,511,601 |
| Length | 95 |
| Max. P | 0.517459 |
| Location | 22,511,506 – 22,511,601 |
|---|---|
| Length | 95 |
| Sequences | 6 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 64.66 |
| Shannon entropy | 0.66012 |
| G+C content | 0.51696 |
| Mean single sequence MFE | -28.75 |
| Consensus MFE | -10.19 |
| Energy contribution | -9.25 |
| Covariance contribution | -0.94 |
| Combinations/Pair | 1.82 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.35 |
| Background model | dinucleotide |
| Decision model | sequence based alignment quality |
| SVM decision value | 0.05 |
| SVM RNA-class probability | 0.517459 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>dm3.chr3R 22511506 95 - 27905053 CUCUUGGUCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCA--GCAGUCCGGUUGGCGUGGGAGCACGAGCACCACCAUGUCCAACGCCCUUC ...((((.((((............(((((((((((((.....).)--)))).)))))))..((((..((....)).)))))))).))))........ ( -32.30, z-score = -0.93, R) >droSim1.chr3R 22340618 89 - 27517382 CUCUUGACCGAGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCA--GCAGUCCGGUUGGCGUGG------GUGCACCACCAUAUCCAACGCCCUUU .....(((((.((((......))))(((((.((((.......)))--)))))))))))(((((((------(((........))))).))))).... ( -32.30, z-score = -2.31, R) >droSec1.super_13 1285656 89 - 2104621 CUCUUGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCA--GCAGUCCUGUUGGCGUGG------GUGCACCACCAUAUCCAACGCCCUUU .....(((((((..........)))))))((((((((.....).)--)))))).....(((((((------(((........))))).))))).... ( -29.80, z-score = -1.24, R) >droYak2.chr3R 4846548 72 + 28832112 CUCUUGGCCGUGUAAAAAUAAUUGCGGCCGGUUGCUCAAUUUGCU--GCAGGCUGGUUGGUAU-------CCAACGCCAUC---------------- ....((((((((..........))))))))((.((.......)).--)).(((..(((((...-------))))))))...---------------- ( -22.30, z-score = -1.14, R) >droEre2.scaffold_4820 4929659 94 + 10470090 CUCGAGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCA--GCUGGCUGGUUGGAGUGGUGGCACCACUAUACUCGUAUCCAACGCCAUC- .....(((................((((..(((((.......)))--))..))))((((((((((((....)))))).......)))))))))...- ( -37.91, z-score = -3.15, R) >droMoj3.scaffold_6540 17426260 86 + 34148556 UGUUUUUGUGUGUAGAAAUAAUUGGGAAUUUCUGUGCCCUUUGCACGGCAAUGGAGUUUCAGCCAU----CGGACCUGACUGAGUCGAUU------- (((....(.(..(((((((........)))))))..).)...)))((((..(((........)))(----(((......))))))))...------- ( -17.90, z-score = 0.77, R) >consensus CUCUUGGCCGUGUAAAAAUAAUUGCGGCUGGCUGCUCAAUUUGCA__GCAGUCCGGUUGGCGUGG_____CGAGCACCACCAUAUCCAACGCCCUU_ ........................(((((((((((............)))).)))))))...................................... (-10.19 = -9.25 + -0.94)
Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:25 2011