Locus 11622

Sequence ID dm3.chr3R
Location 22,508,163 – 22,508,254
Length 91
Max. P 0.945513
window15969

overview

Window 9

Location 22,508,163 – 22,508,254
Length 91
Sequences 5
Columns 93
Reading direction forward
Mean pairwise identity 85.71
Shannon entropy 0.26626
G+C content 0.30082
Mean single sequence MFE -18.03
Consensus MFE -14.62
Energy contribution -14.62
Covariance contribution 0.00
Combinations/Pair 1.16
Mean z-score -2.06
Structure conservation index 0.81
Background model dinucleotide
Decision model sequence based alignment quality
SVM decision value 1.51
SVM RNA-class probability 0.945513
Prediction RNA

Download alignment: ClustalW | MAF

>dm3.chr3R 22508163 91 + 27905053
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUUCUAUUAUCGAAUUAUAGCAUAAACCAGUCAGUUUAACAACUAAUGGCUGU--GCCCUUC
..(((..............(((((((((((((((........))))))))))))))).((((((.............)))))).--))).... ( -19.42, z-score =  -2.41, R)
>droSim1.chr3R 22337197 92 + 27517382
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUUCUAUUAUCGAAUUAUAGCAUAAAC-AGUCAAUUUAAGAGCUAAUGGCUGUGUGUCGUUC
.(((((..((.....((..(((((((((((((((........))))))))))))))).-.)).....))..)))))(((((.....))))).. ( -20.00, z-score =  -2.45, R)
>droSec1.super_13 1282221 92 + 2104621
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUUCUAUUAUCGAAUUAUAGCAUAAAC-AGUCAAUUUAAGAUCUAAUAGCUGUGUGUCGUUC
((((..(((......((..(((((((((((((((........))))))))))))))).-.)).......))).))))................ ( -15.22, z-score =  -1.22, R)
>droYak2.chr3R 4843071 92 - 28832112
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUCCCAUUAUUGAAUUAUAACAUAAAC-AGUCAAUUUGAGAGCUAAUGAUUGUCUGUCGCUC
...((((......))))...((((((((((((((........))))))))))))))((-((.(((((...........))))).))))..... ( -20.30, z-score =  -2.53, R)
>droEre2.scaffold_4820 4926184 85 - 10470090
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUUCUAUUAUCGAAUUAUAGCAUAAAC-AGUCGAUUUAAGAGCUUUCUCUCGUUC-------
..((((..((.....((..(((((((((((((((........))))))))))))))).-.)).....))..))))...........------- ( -15.20, z-score =  -1.67, R)
>consensus
UUGGUUUCUGUAAAAACAAUUUGUGUUAUAGUUUCUAUUAUCGAAUUAUAGCAUAAAC_AGUCAAUUUAAGAGCUAAUGGCUGUGUGUCGUUC
((((((..((.....((..(((((((((((((((........)))))))))))))))...)).....))..))))))................ (-14.62 = -14.62 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Wed Apr 20 00:46:24 2011